Detailed information of evm.model.HiC_scaffold_31.720 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:8532819...8537076
NR annotation: XP_047123105.1, ribosome production factor 1 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8AVP1Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1
Q9H9Y2Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2
Q5R631Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001859 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.HiC_scaffold_31.720. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR044281
all species →		FamilyU3 snoRNP protein/Ribosome production factor 1Interproscan
IPR007109
all species →		DomainBrix domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22734
all species →		U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000460
all species →		Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470
all species →		Biological Processmaturation of LSU-rRNAInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042134
all species →		Molecular FunctionrRNA primary transcript bindingInterproscan
GO:0019843
all species →		Molecular FunctionrRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_31.720.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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