Detailed information of evm.model.HiC_scaffold_31.73 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:1207518...1225410
NR annotation: XP_047127138.1, la-related protein 1B [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PKG0La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2
Q6ZQ58La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3
Q659C4La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005211 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21071
all species →		LARP1_HEATLARP1 HEAT repeat regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR006607
all species →		RepeatLARP1-like, DM15 repeatInterproscan

 PANTHER
No PANTHER signature was detected for evm.model.HiC_scaffold_31.73. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0000339
all species →		Molecular FunctionRNA cap bindingInterproscan
GO:0048255
all species →		Biological ProcessmRNA stabilizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18757LARP1; la-related protein 1-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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