Detailed information of evm.model.HiC_scaffold_319.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_319:36829...47318
NR annotation: XP_048576898.1, ATP-dependent RNA helicase DDX1-like [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2VD92ATP-dependent RNA helicase DDX1 OS=Xenopus laevis OX=8355 GN=ddx1 PE=2 SV=1
Q5XH91ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis OX=8364 GN=ddx1 PE=2 SV=1
Q92499ATP-dependent RNA helicase DDX1 OS=Homo sapiens OX=9606 GN=DDX1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003559 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270
all species →		DEADDEAD/DEAH box helicaseDomainInterproscan
PF00622
all species →		SPRYSPRY domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545
all species →		DomainDEAD/DEAH box helicase domainInterproscan
IPR043136
all species →		Homologous_superfamilyB30.2/SPRY domain superfamilyInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003877
all species →		DomainSPRY domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001870
all species →		DomainB30.2/SPRY domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12381
all species →		HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_319.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP