Gene detail

Detailed information of evm.model.HiC_scaffold_32.1 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:4503...35657
NR annotation: XP_046840544.1, TBCC domain-containing protein 1-like [Xenia sp. Carnegie-2017]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.1

atgaccaagaatgttgggaaAAAGGTCCAgcttgggcaaaaaggaagttgggcgcaacagagATACTTCCAAACATGTTATTCAATAACAGAAAGAAATTGTGAACTGAAGCTTATGATTGCCGAGCAGTACATGAGATGTGAAACCGAGGAAGATAAAGTGAGTTGGAGAAATCGATGTACTGTTGActtgatgaaatttctacttttccTCTACATTCAACATGCTCAGGTCATTTCACTGAAGACATCAATGGTGGTGGGAGAAGAATGGCCGTCAAGAGCAAGGTCTCCAGATTTGGAAGGTCGTGCTGGTGTAGGAGCAAAGTCAATTGATGAACAAGCTCAACTTCATTTTGTGCAAAATAATTTAATGGACTTTCTTGAATTGCTGGTAGAACCTGATGCATATGGAATGGGGACAGATGGAGATAGTCCACTGAGTGAAGATGCAATCAAGGCACTCAGCTTTATTCTCTCTGGTACAGATGGAAGCGCCTACCCTGTGCCTTACACTTGTTCTAAATCAATTGGAGATTTGAGTTTTAGCCTGAGCAGCAGTATGGGTGAAGAACTTATCCGTCACTCGAGAGGTGGTCTGGTTGATTTAGCAGAACTTCAAGAAAGTTTATCAGCAGATATGGACTTAAACTCAAGTTTCAAATTAAGCCAAGGATCTATAGCGAATAAAATCATAACAAATGGCAATTTTGCTCCTGAAAGACATCGTTTGATGATTTTCAATCAAGTTTGTAAGCGAACTGTTGCAAGGGCTGGAGATCCACTTTCACACAGCACCGTGAAATTACATCGCTGTCAATATTCGTACATGTACTTGCTATCCCCGTTAAGAGCAGTTACAATTGAGAAATGCCACGATACTATGATCTTCCTCGGACCTGTGGAAACTACTGTCAATCTTCTTGCATGTGAAAATGTACAAGTCTTTGCTGTGACAAGAAAATTGACCATCAAtTCATGCAGAAAATGCACGTTTTATCTGTTTGCTGAGACAAAACCAGTCCTTGCCGGATCAAATGAAGATATATATTTTGCACCATACAACACATTCTATCCTTCTCTTATTGAAGATATGACTTCTGTTGGATTAACGATTTCATTCAATTTCTGGAATTGTCCTATTCTTATTGGAAACGATGTTGGAGCTGCCAGTGAAAAATGCTGGGATGAATTACCTGGAGAAGATTTTCTAAGTGTCTGTATTCCATTTGATATGGAAGGTGAAACAAACGAATGTCCATTTAAATTACCAAGCAAATATGAAGAAGCTCAGAAGAAGAAAGACGAGGCTTTGGAGAACTGGCACAGACTTGTACGAGAAGCAGAGTTAACAAGAGACAAAAGGAAACAATTACAATCGCTTGTACAGAATAGGTTCCAGATTATAAACTATTTTGGTGGAACAAATTCAGATGCAGTTGACAAGGATGAAGAAGTACAGAACCAACCTCTCAATCAGCATAGTTTGTCCAATAGTGATTTTGGAAAGCAAGAGATTCTGGATCCAGGTAAAAATTCAGAAGAACATTCAAATGAAATGTTGCTGCCAGAACATGACAATGAGGTGAAAAATGGAGAGATGGCAACAAATGGCAAAGAGCTTTCAATTGAACACCAATATAGCCctggaaaagaaaataaacatgaaaatgataatgaagatgacaGTAATTTGAGAAGAATGCAGATGGAAGGATCAGTGCCTAAAGAAACTTTGGCAGATGTGGGCAGTAAATATAGACATATTGATAGTGCTAAGTCTGAACAAGCCCATTTGAGCTCAAATAGTGTTCATGTGAAGGAAATAGTCACCAATAATAATGTAATGGAAACAAATGGTAATATTGCTAGACCAAGATCAGATGATCTAGATACTTCTGATCATTTCTTTGATGCAGTAGGTGAAAATCACTTGGGAAATTTAACTGGAGGTCAGCAACAGTCAACTCAAACAACAAATAAGAAAGGCTCTGATGGAAGTGTTGATGTTAAAAAATCTGCATGCAGTAGTAGCTTAGACGCTGACGGTAATGATATTGGGGAATTCAGCAACATTGATAAGACAGCATCTAATAGTGTTCAGCAGGAAAATAATTGCATAAAGACCTTTGGGAATTTATCCTCTTCAAAgaataatgttgatgatgaatgTAAGACTGACATTGAAATGGGTGAggatgaaaatttcaaattgtcaACTTTAAGTGTTGGGGATAATATTGCAATGGATGTCACTGAGAATAGAGGTATAACTGGCTCAGAGGTGATATCAAAGAGTGAAAGTTATGTTGTAAGAACAGAATCAGACTtcaatgaaataatgaaaacaaatgGTGATATCAAGACTGCTAGTATTAAAAGTGAACGCCTGCAGATAGATTTAAAAGACTGTATAAATAAGAATGGTTCTGAAGTTGCAACAAGCCAAGCTGGTCCAACTGGTTTAGGTTCAAACATTCTTCATTCATCTTCCTCAAAGAATACTCCTATCACTGGAACCTTCCCTGTTTCAAACTCAAGATCCAATCTTACTGTACTGGATGAAACTAGTAATCTCAGTACTATATCAACAAACAGCAACATAACTCAGAAGATGATAGATGAAGAAGAACAGTATgtaaaagaagatgaaaaattaaAGCATATGAAAGGGAAGGGCATCCAAGAGTTAGAAGCAGCTCCTGAAGATCAGAGATTTGATAGACTAAAGAACTTGTTAGACAGATCAAATGTTTATGCTCAGTTCCTGCTGCAGAGAATGGACCAGCAGAGGGAAGACGAAAAGGGAAGGAGAGAAAAGAAACTTAAAGTTCAGGAAAAGAGAGCTGTAACTGCTGCCAAGAAAAAGGATGAAAAAAGTACGGCAACATCTAGTCAGGAGTCGCCTGGTAGGAATCTTTCACTGCGTCATAAAAATGATAGGAAGAGAAAACGTGAGGATGGAGTCGAAAGCCAAGCAACAAACCAAAAAGAGGTACATCCTGAAGcctcgattccaaatttgacggctcgtttcaggttgtttcaggttgtttcaggtgatttcatctcgtttcaggtcgtttcag

Transcript

evm.model.HiC_scaffold_32.1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NVR7	TBCC domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TBCCD1 PE=1 SV=1
Q5FVR8	TBCC domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Tbccd1 PE=2 SV=1
Q640P7	TBCC domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tbccd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006716 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07986 all species →	TBCC	Tubulin binding cofactor C	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039589 all species →	Family	TBCC domain-containing protein 1	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR006599 all species →	Domain	CARP motif	Interproscan
IPR012945 all species →	Domain	Tubulin binding cofactor C-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16052 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031616 all species →	Cellular Component	spindle pole centrosome	Interproscan
GO:0051661 all species →	Biological Process	maintenance of centrosome location	Interproscan
GO:0051684 all species →	Biological Process	maintenance of Golgi location	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_32.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.