Detailed information of evm.model.HiC_scaffold_32.237 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:2901663...2917154
NR annotation: XP_027043852.1, coiled-coil domain-containing protein 81-like [Pocillopora damicornis]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5XIN9Coiled-coil domain-containing protein 81 OS=Rattus norvegicus OX=10116 GN=Ccdc81 PE=1 SV=1
Q6ZN84Coiled-coil domain-containing protein 81 OS=Homo sapiens OX=9606 GN=CCDC81 PE=1 SV=2
Q9D5W4Coiled-coil domain-containing protein 81 OS=Mus musculus OX=10090 GN=Ccdc81 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003204 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00112
all species →
Peptidase_C1Papain family cysteine proteaseDomainInterproscan
PF14908
all species →
HU-CCDC81_euk_1CCDC81 eukaryotic HU domain 1DomainInterproscan
PF08246
all species →
Inhibitor_I29Cathepsin propeptide inhibitor domain (I29)DomainInterproscan
PF18289
all species →
HU-CCDC81_euk_2CCDC81 eukaryotic HU domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025660
all species →
Active_siteCysteine peptidase, histidine active siteInterproscan
IPR026295
all species →
FamilyCoiled-coil domain-containing protein 81Interproscan
IPR000668
all species →
DomainPeptidase C1A, papain C-terminalInterproscan
IPR028034
all species →
DomainCCDC81, HU domain 1Interproscan
IPR013201
all species →
DomainCathepsin propeptide inhibitor domain (I29)Interproscan
IPR040673
all species →
DomainCCDC81, HU domain 2Interproscan
IPR000169
all species →
Active_siteCysteine peptidase, cysteine active siteInterproscan
IPR038765
all species →
Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR039417
all species →
DomainPapain-like cysteine endopeptidaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14362
all species →
COILED-COIL DOMAIN-CONTAINING PROTEIN 81Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0008234
all species →
Molecular Functioncysteine-type peptidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23047UNKL; E3 ubiquitin-protein ligase UNKLEC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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