Gene detail

Detailed information of evm.model.HiC_scaffold_32.263 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:3170492...3187358
NR annotation: XP_002159471.2, alkaline phosphatase [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.263

ATGTTTGATGAGATCCCAAGTGATGGCGACGAAACAACAGATGAAGAGGAAAGTGATACAGACAACACAGACCCAACATTTCTACCTCCACTGTTTGAAGATCTTCCTGATCTTGAAGAGAACAATATGAATGAAGAaaatgaggatgataatgaagGAGAAGATACTGATGAAGATATGAATGatggaaatgaaaatcaaaagtcAGCACCCACtgaaaagcaaaagaagaaaactgaGTTGAACCGCaaatggaagaagaagaatgagcCCATGGTCATAAATGAGTTCACTATACAAGAAGGTCCTGTTCGCCAACTATTTGACCAATGCCAAACACCTGGAGATTACTTTTTGAACTTCTTCgatgaagaaataagaaaaaacatTGTATACCAAACCAATTTATATTCAAATCAAAAAGGAAAGCATTTCCCACCACTAAATGAGAGAGAATTGTTTGGATTCATTGGCATCAATTTTGTCATGGGTTATCACAAGTTGCCTTCTTGGACTGACTACTGGAAGCTTGACAGGGATCTAAGTGTTCCTATTGTTGCAGAAACATTGCCCAGAAACAGATTTGCctcaattttatcaaatttgcaTGTCAATGACAACACTGCCATTCCTGCAGGTAACAAGGATAAATTGTACAAGCTAAGGCCTTTGATTTCATCCTTGAATGAAAACTACACCAAGCTGTACAATGTTTCCCAAAAAGTCAGCATTGATGAAAGTATGATACTCTTCAAAGGACGCAGCTCTTTGAAGCAATACAACCCGAAAAAGCCAATAAAACGAGGATACAAGCTATGGATGAGGGCTGACATGGATGCCTATATTAGTAAGTTTGACATCTATCAAGGAAAAAATGTCTCCCTTGATGTCGAAGGAGCACCAGTTGAATTTGGGCTAGGAGAGAAAGTAATTTTCAGCTTGACAAAAGATCTGAGAAATAAGAATCACCAGGTTTTTTGTGATAATTACTTTTCATCTGTCAACCTGATGGAGTATCTGAAAACAAACAGCATTATGGCATGTGGGACCATAAGAACTGACAGAAAAGGCTTGCCAAAAGGATTGAAGGCAGACAGAGAGCTTCAACGAGGGGAATACGACTTCCGCGTATCAGAGAAGGGAATTGCTTTTTACAAATGGATGGACAACAAAGCAGTTCATCTCATATCAAATTTTCACGGATCTGATGTCTCCTCAGTGACAAGAACACAAAAAGATGGGTCAAAAAAAGAGTTTCCTTGTCCAATAGCTGTAAAGCACTATAATGAGCATATGGGAGGAGTGGACAAGGCAGACATGTTGTGTTCAATTCATGGGGTTggaagaaaatcaaagaaatggtGGCATAGAATTTTCTTTGGAGTTCTGGACCGTACATTGGTAAATGCATATGTGGTTTATCAGAAGTTGGAAGGAAAGAAACAGCCTGTACTGGACTTCCGAAGGTCAGTAGCTTTGGAGCTACTGACCCTAGCAAGAACACCAAGAGTTGGACGCCCTGGCTCCGCACCACCACCAGCAAAGAACCGTAAGAGAAGAAGTACAGAATATTCTGTTGAAAGAGGCATTCGCCTGCAAAATCGTGGTTCTCACTGGGTTGTTTACGAAAAAGAAAGGGGAAGATGTGAGAACAAGATGTCACCGAAGTCGATGTCCTCGTTTTGGCTGACATTATTCGCCGTTTTCGCTTGCTGCATGGTATATTGTTTGTCTGTACCACTCAGAGCAAGCGAAAGTTCTTCTGAAATTTACAAGCGACAGGAGAAAGACGTTTGGTTTGAACAAGGGCAGAAGTTTATTAACGATGGGTTGAAGCTGAAGCAAATAACtagcaaagcaaaaaatgtcATCTTATTTCTTGGAGATGGTATGGGTATTAGCACTGTAACAGCTGCAAGAATATTGCAAGGACAGCTGAATGGCAAAACTGGAGAAGAAGGTTACCTGAGCTGGGAAAAATTTCCTTATGCGGCACTGTCAAAGACGTATAACACAGACCAACAGACGCCAGACTCCGCTGGAACGGCAACGGCATTTATGACCGGCGTAAAGTCAAAGGCAGGTGTCATTTCAGTGGACGACAAAGTAGAATATGCAAACTGTAAGTCATTTCCAAAAACTAGTGTACTGTCAATGGTGGAATTGGCTGAAATCAAAGGCCTTGCTACTGGTGTTGTTACGACTGCTCGTCTCACTCACGCTACGCCTTCCACTGCGTATGCACATTCAGCTTCAAGAAGATGGGAGAACGATGCTGATTTACCAGACAAGTCATGTTCTGATATTGCTCGTCAGCTTATCGAATTTCCTTATGGCGATGGTCTTGAAGTAGCAATGGGAGGTGGCAGGCGTAACTTCATGCCGAATACATCTGTAGATCCAGAGTATGGTTCAAAAGGAAGACGAAAGGATGGGAGGAACTTGGTCAATGAATGGACAAGCAAAACCAAAGTGAATGACAAATGGTCTTATGTTTGGAATGAAACACAGTTTCGAAAATTAGATATCAACAAAGTTAATCATGTACTTGGTCTGTTCGAACCCAGTCATATGCAGTATGCTGCCAACCGATTATCAGACAAGGGAGGCGAACCATCGCTGACAAGCATGACAGAATTCGCAATTAACATGTTGAACAAGAATTCCAAAGGCTTTTTCTTGCTGGTAGAAGGTGGACGCATTGATCATGGTCACCATGCAGGAAATGCATATAACGCATTACACGATGCTGTTGAAATGGCGAATGCTGTTGCGAAAGCACACTCAATGACAAAAGAAGAGGAAACCCTGATTGTCGTAACTGCAGATCACTCTCACACATTCATGATCGCTGGATACCCGAAACGTGGCAACCCGATATTTGCTGTTTCTGGTACTAGCACAGCTTTGGATAATAAAGGCTGGACTACCCTCGGTTACTTGAATGGACCAGGAGCAAAGACAAATGCCTTGCGTGACGACCCTGCTTCGACTAATACAAGTGCCAAGTCGTACAAACAACAAAGTTTAGTTCCACTGAATTCTGAAACACATGGTGGCGAAGATGTTGGCGTGTATTCCCGCGGACCCAGAGCACATCTGTTACATGGCGTTGTAGAGCAGAATTACATCTTCCATGTTATGGACTATGCACTTTGTTTATCAGCTGGAAAAGAGAAGATTTGCAAAGAGCAAGATCGTACGTCTGGTGTTGTTAGCCTTAGTAGCAGTCGTGTTGTGCCATTCTCgcttgtttttatttatatctttagCTGGTTTTCATCACATTAA

Transcript

evm.model.HiC_scaffold_32.263

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09487	Alkaline phosphatase, tissue-nonspecific isozyme OS=Bos taurus OX=9913 GN=ALPL PE=1 SV=2
P09242	Alkaline phosphatase, tissue-nonspecific isozyme OS=Mus musculus OX=10090 GN=Alpl PE=1 SV=2
P08289	Alkaline phosphatase, tissue-nonspecific isozyme OS=Rattus norvegicus OX=10116 GN=Alpl PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000801 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00245 all species →	Alk_phosphatase	Alkaline phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001952 all species →	Family	Alkaline phosphatase	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11596 all species →	ALKALINE PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0004035 all species →	Molecular Function	alkaline phosphatase activity	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_32.263.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.