Gene detail

Detailed information of evm.model.HiC_scaffold_32.282 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:3408140...3444121
NR annotation: ARJ54255.1, ERK2 [Aurelia aurita]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.282

atgGCGTCGGTGGGAGTCCCTGAGCTTGTACGCGGACAAGTTTTCGATGTCGGCCCAAGATATGTTAATCTTAGCTACATTGGAGAAGGAGCATATGGCATGGTTTGCTCAGCCACAGACGTTTACCAGAAGCAAAAAGTTGCAATAAAAAAGATTAGTCCATTTGAACACCAGACATATTGTCAAAGAACTTTGAGGGAAATTAAGATTTTGACAAGATTCAATCATGAAAACATAATCAACATACAAGATATTCTGAGAGCCCAAAACTTGAATGATATGAAAGATGTATATATTGTACAAACTTTAATGGAGACAGATTTGTATAAGCTACTGAAAACACAGAAGCTTAGCAATGACCATGTTTGCTATTTCCTATATCAAATCTTGAGAGGCTTAAAGTATATCCATTCAGCAAACGTGCTGCACAGAGATCTAAAGCCAAGTAACTTGCTGCTTAATACAACTTGCGATTTGAAGATTTGTGATTTTGGATTAGCAAGAGTTGCCGATCCCCAGCATGATCATACGGGAATTTTGACAGAATATGTTGCAACAAGATGGTATCGTGCGCCTGAGATCATGCTCAATTCAAAAGGCTACACTAAATCTATTGATATTTGGAGCGTTGGCTGCATTTTGGCTGAAATGTTATCAAATCGACCACTGTTTCCTGGTAAACACTATTTGGATCAGCTGAATCATATTCTTGGTGTTTTGGGATCGCCATCGCAAGAAGACTTGCAATTTATCAGAAATGAAAAGGCTAAATGCTACCTATTGGGACTACCACATAAACAGGGAATGAATTGGGACAAGCTGTTTCCAAATGCAGATCCAAGAGCGTTGGATCTTCTTAACAAGTTATTATGCTTCAATCCGTTCCAAAGAATCACAGTTGAGCAGGCCTTAGCTCATCCTTATTTGGAGCAATATTATGATCCCGCTGATGAGCCTGTAGCCGAAACGCCTTTTTCATTTGATACAGAGCTGGATGATCTGCCCAAAGAGCATTTGAAAGAACtgatttttaaagaaacaatgGTATTCTGTGATTGGTTTTTCTCGTTCAATGGAAGCTTAGAAATGGAATCAATAACTGACTATGTGGATCCCTGGGTCTGCCCCAACGACAGACAACTTGCACTGAGGGGACGCCTTGATGTGGGTTGGTCAACATTACCTGATAATGTTTACAAGCGAAGTCACATTGCTGCAATCTCAGAGTCTGAACAAGATAAAATAGTCAGAGCCCTCTGCAAGGCATCAGAACTAGAATGCAGAGAACAAGAAAGGATCGGGTATCTTGTTGAGAAAGTAAGCACTTTGAAAGCAAGCATCATTGGAGATGGAGAGAGTACTTGCTTGCTATGGAAGAAATCTGGAGCTTGGTTTTATAAAGCAATGCCTCATTACGTCACCGGAGAGGAACGCATCTCTAGAGTGAATTCATTAAAACATAATCCTTCGATTAGTTCAGCTGGAACTCGCAGTGCATCGTTAGTGCCTCGCACATCCATCACACCTTCAATACGACGTCCTTCATTTTTCACCGAAGAAGaTGTCAGTGAAGAATCCAGTGAAGAGTCTGAAGATGAAATTTCAAACCATTTCAATTCTACGTTGCCACAAGTCAGTCGTAAAGCTGATTTCAATCTTGGAATTGATGTTAATGAAGGCCTGTCGAGGCATACTTCACGTGAAGAGCAAACACACTTACCGTCGCCTCCTGGCATATCAGTAACCCCTGAAACTCCTTTGGATTTCCAACCTTCATTTCAAGATCATTTCGACAATCCAGACGGTCCTCAGTACGACCACACTGACGGTGCAGAATCGACCGGCTCACTCAGTCCACAAATGCGACCTCGAGTAACTAGCAATATCAGCCGGACTGATGCGAAGAAAAAGCTTGCATTGAAGTTCAGAAAGAAAAAAGGTCAATCAAGCTCACCTTCTGCTAGCCCCGATCCAAGTCGGAAGAGTGACTCCGTCTCTCAACATGAAGAAGAGGATGTCGatgaaatattcaaaagttATGAAGCTCAGAATGGTGAATCAAAACAAAAGCCAGAATACCTTgggGCTCTAGGAATACTTGAATTCACACTACAATATGATTCAAACACCTTGGAGTTGTTGATAATTGTTAACTGTGGAAAGGGTTTAAAAGCTATGCATCATGGCAAAACGTCAGATCCGTACGTCAAGACTCATCTTTGGCCCGATTCGTCAAAGTCGACGAAGAAAAGGACACAGACTGTGCATAGAAATTTGAATCCCGTGTTCAATGAAACCCTGATTTACCATGGAATATCAGAAAAGGATATAACTACTAAAATATTACGACTGTCAGTCATGGATGAAAACAAGATTTCAAGCAATGCTTTAATTGGAGAAACCTGTGTTCCTTTGAAGGGCTTACTGAACCGACCAGTTCAACAGTTCAAAAAAATTCTTGACCCACAGTCAGAGCTAAACATGACCGAAGATCAAGTTGATGACAGCCCTGGTCGAATTGAGCTTGCATTACATTATTTATCAAAGAAGCAAAAGCTTGTTGTTGGTATTATACGATGTGCTGGGTTGAAAGCAATGGATCCTAATGGATACTCCGATCCTTATGTCAAATGCTACCTGAAACCTGAGCATCATAAAAAATCGAAGAGGAAAACTGTAGTCAAGAAGAAGACACTGAATCCTGAATTCAACGAGgaATTCGTATATGACATTCCACACAACGAGTTGGCAAAGAAGTCGCTTTTGATCTCAGTTTGGGATCATGATGTTGGAACAAGAAACGATTTTATTGGTGCTGTCAGTCTTGGCATAAACTCCAGTGGGGAGGCGCTGAAACACTGGTTCGAAACACTGAAGACATCAGACCGACGAGTAATCCGCTGGCACTCTCTGTCGGCAACGATGCCGTCTGGTATAGAAGCATTAAACATGGATGAAGCAAGTGGAACACAGTTATTGTCGATTATAGTCTTGACGGTTTTCTTTGGAGGGTTCGTTCTTGCAATTTTggttattttcaacaaaagaaaACCAGGTGAAAACAAGACAGCTTCGAACGAAGAAAAGCTCAAAGAAAATGGACAGAGCCAAAGCGAGAAAATGCAGGAATCGAAAAAGAAAAACGTTCAAGGCAAATTTAAAGCAAAGGAAACTCAATTTTCCCATCCAATGATGCAGGCAACTTTGAAAGGACACACTGGTGCAATAATGCAATTAGAATTCAGTGTCTGTGGCAAATATCTCAGCTCCTGTTCTGAAGATAGAACAATACGTTTGTGGATGACAAAGGAATTTACAGAAAAAGAACACAGgtatataagagccaatgttGAACTTGACCATGCAACATCAACATCTTTTAGTCCTGATTCAAGAGCTTTCATTGCATCTCTGGCTGTTCATAACACCATTAGAATCTTCAAAATTAACAAGAAAAAAGAAGGAGCAACACCTGCATTCATAACAACAGAAGCCGAAGATTTTCCCAAAGTTCACAAAACTGAAATCATTAATGTTGGTATTTCATCTACTGGGAAGTTTGTCATGTCTGCAAGCAAGGATACAACAATTATAATCTGGACTCTGAAAGgAGAAGTTTTAGCAACAATCGATACCCTTCTTGTTTATAACTCATATGCATCTATGTCTCCATGTGGAAATCTAGTCGCAGCATCAGGTTTTACATCAGATATAAAAATGTGGTATGTTGAATTTGACAAACTTGGAGAATTTAAGCAGGCTTCAAGAGCTTTAGAGCTGAAGGGTCACTCAGCAGGAGtcctttcattttctttctctaGTGATTCTAAAAAGGTAGCCTCAATTTCGAAAGATGGAACTTGGAAACTATGGGACATTGACGTAAACTACCAAAAAGGCCAAGATGCTTATTTACTCTATACTGGATCGTacacaaactattttcctggaTCCCCTGTAACTGATTCAGCTGTCATTGCCTTTTCACCTGATGGTTTTACCGTTGCCATAGCAAACGGCAGATCTATCATTCTATTGGAtgctgaaacaaaagaaaaatcggATGTCATATCAGATGCACATGCAGATAACATTAACTGTTTATCATGGAATCCAGACTCACGACAGCTAGCCTCATCTGGAGGTGGAGACAGAACCATTCGGGTGTGGCATAATCCGGTTGGTGTGAAAGCATTCTTAGCGAGCCTAAAACAGAAGCTGCAGCATGTTAAGTCGGATTCACACAAGGAGCGTATAGAGCAACAAATCCGTGAAGCCAAGCATTATCTAAAAAGATTTTCAGCGAATTGA

Transcript

evm.model.HiC_scaffold_32.282

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63085	Mitogen-activated protein kinase 1 OS=Mus musculus OX=10090 GN=Mapk1 PE=1 SV=3
P63086	Mitogen-activated protein kinase 1 OS=Rattus norvegicus OX=10116 GN=Mapk1 PE=1 SV=3
P46196	Mitogen-activated protein kinase 1 OS=Bos taurus OX=9913 GN=MAPK1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000798 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR003527 all species →	Conserved_site	Mitogen-activated protein (MAP) kinase, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008349 all species →	Family	Mitogen-activated protein (MAP) kinase, ERK1/2	Interproscan
IPR010911 all species →	Domain	Rab-binding domain	Interproscan
IPR042410 all species →	Family	Transducin beta-like protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44321 all species →	TRANSDUCIN BETA-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004707 all species →	Molecular Function	MAP kinase activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_32.282.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.