Gene detail

Detailed information of evm.model.HiC_scaffold_32.349 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:4759118...4784409
NR annotation: XP_032236005.2, cys-loop ligand-gated ion channel isoform X1 [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.349

atggcctttttcaacaagatcttgggtgtgcaagagcccctttctgtTTTACTTGTGTATTGTTTCATCCTATTGTTCACCTattattctattgaaaaactcAAGTCTATTAGATCTCTGAGCAGTGCCGGCCGACGCAAGACCAAAGAACTAAAAGGCAACGATGTCTTAAAAGGACAGAAGGAGGTATCACCCAGGCAACAGAATGTGATTAAAACAAAACCGCTGAAGTCGAAAGGCAACAACCTTGCGGAAGATGTTTCGCATGACCAGCAACAAGCATATTCTGTTACCTCTaggcaagcaaaacatgttgcAAGCCAAAAAGAACGCCAAAACAGCAGGCAACCGAACGTTAATGCTACCAAACCTCGTGTCAAAGGGAAAACTACTGCTGCTGTGAATCGAGATAAACATATTGCCAATATTAAGAAAGCAAGCAGTGATGTAgctcaaaatgaaaataatttgaaaaatggtGCTGTCATAAGCCAGGCACAGCTGGCTACTTTGATGGAGGCACTTAGGAGTGGAGATACATCTGTATTGCAAAAGGTCGTTTCACAAGACACGCAGAATGCTACAACGGAGTCCAAGGCACCTCATGTTACTGAGCCGGCATTCGTTCCAGGATCCGAATATTTCCATGGGTTGGAACAAGGGGCGGGTGGTGCCGATGTCAATGAAAGTAAAATTCAATTTCATGGAGATGTTTGTTATTTCGCATTACAGGACCATGAGGCAAAATCAACTAAAAAAGCAGATGCTCACTCCATTGGAACAGTTTCTGTCACAAGCAGAAATGAACTGCAGGCGATATCATACAGCAGCACTCCTACCCAAGGGATTCAAGGCTCCAGCACAGCACAGTTATCGTCAAGAGCAGACCCAGTGGCAATGCGGAGTTCGTTTGCAATTGGTGCCCCTGGACAGGTTGCATATAACTATGATCAACAAAAGAGGGACAAAAGCAAACAGTATTTGGCAGATCTTGAGCGACAAATACAGTCGAAGAAAACATTGCCACTGTCAGACAAAGAAAGATTCATTAGAGCTATGGAAGATTCGTCTACTCCCCAGAGTAAGCCTACGAACACGAGAGACTATTCGGTAGAGAAAAGTTTACCACACGACCACAGACAGGAACAACTGCGAGACAAGGACATTTCACGGGAAATACTACATGAACCCAACACTGCTGTTTCTGAACAGAGCGAGCGGGATCACTCATTTGGTGGAAGTGGAAGACAGGCTAAAAGCCAATTTGAGTTAGATGAAATAGAACGACGAAGAATCAAACATCTGGAACATCAGAGAGCCGTTCAAGAACAAGTAGAAGAAAAACGCAGACTGAAGATGGAGGAGAGAGAAAGACAGCTAagagaagagaaagaaagtGAGGAGAAGCTAGCAAGAGAACGAGAAATGCTTCAATTACAATTTGAAGAAGAGATGAAACGACAACAAGCTAGAGAGGAAGCAGAAAAACAGCGTCAACTTGCACTTCAAAAGAGCGTCCTTGAAGCTTATGAAACGGCAAAACAGGAAAAGCAGAACTCCCTACTAATGAAGCTCAGAGCAGGTGGACATGATATCTCTCACCTTCAACACGACGAAGGCACAGGCGAGCAAGGCAGTGAATTAGGCTCAGAATCTGTGATTGAAACCAAACTTCATCTGTTGCATGAATCAAACGAGATGCCATCACAACAGTACTCATCCCGCTCAGACAAAGGATTTAGGCCAATATTGAATCTTACTGATGAAGTAtacgaagaaaagaaaaagcagtCGAAcactaaacaaacaaaaaaggagatcaagaaacaaaatataaacaaatcaACGAAAACAGAAAGTAATGTTGTTGCTGAAAAGACAAGGAAACATTCTGATTCCAGAAAAAAGCAAGAGGAACGAGCTAGCATCGATAGCAAGAAACATCGATCTTCAATCGATTCGAAGAAATCATCTCGAAGTGAACCCGTTTCAGATAGGCGAGTTAAAAAGAGCAATAAACCGAACTCAAAGGAAGAAAAAACGAGGAATGTAAGCAGGAGAGAAGCGGAAGCTGCGAAGGAGAAAATTAGAAATACGGAAAACAAGAAGAAACAtccaaagaaaagcaaagcagaAGTACTCTCGATTGAAACCGAGGTTATCGAGAAACCTTCAATCGAGGTTGATAATTTTGGATACAAACGCTCATCTACAGTGACTTTACACGAAGACGATACAATAGACTCGGAACATCAGGATATCGAAGTTGATGAGCGAAGATATTCACAACACGAATATAAAGATGAATATTCAAATTGGGATTCATGGAGCATTCCCACAAGTCGACAACAACAAATTCTTGAACAGCTGAGAACACTTCGTAAGAGCAGAAGCCCTGATAATGAATTTCTAGTAGGGCTGAACTGGGCACAACGAGAATCGAGAATGAATTTTGATTCGGAAATAGCTGCAGCCTTGAAAGCAATTTTATCAAAACTGGAAGATATGGACAATAAACTTGGCACAATTGCCAGCAATACTAAAATATCGGATGAAGAATCAAGCTGTatagcaagaaaaacaaaaaaggccGTTACTGTTAATTTGAGAATTAATATATCATCGGTTTCTGATATCGATACTGTGAAACAGGAGTTTACTTGCGAGTTCTTCTTGGCTGCCACTTGGGAGGAGCATGGCCTAAAAGGACAAATCAACGCTGCTGATGTTGACTGGGATAACCACTGGGATCCAAGGATATATTTCTCAAATGCAATCGAAATTAAAAGCATACAGCGTAAACACAAACTTATCAAGATGTATAGGTCGCCATTTCCTACTGTTCAATTATCGTACAGAGTAACTGCACGTTTCAAGACTTTGTTTTCTCTGCATAACTTTCCGTTTGATTATCAAACACTGAAAATCCAGATATCTTCGAAATGGGCTGATTCTGTTGTGATTTTCGACCAGACACCCAATATCCCCAGCGTTTTGTCAACTGCTAACTTTCTAGGCAAAGAAGAGTGGTGTCTATTAGATCACGTCATAGGAAGAGCATCAGCCACGTCGGAAGATTCAACTAAAGTTTCTCTCATTAATTATTCTGCTTATACTTTCGATTTCAACATACGAAGAAAATACGGGTATTATCTGACGAATATAGTGTTCATGATGTTCTTGATATCATTACTATCCTTCACGACATTTTTCATCAGCCCAGCCAACACGGGGGAACGTCTTGGTGTTATACTGACATTGCTTCTCACTGCTGTTACTTTCAAATTCGTTGTTTCCCAGAGTCTACCCCCGGTTTCGTACTTGACTGTGCTTGACTGGTATGTGCTGACCTCcgtcatcttcatattcttggTTGCCTTGGAGAACagcttcgttgctaagatacaGAATGAGAAGTCTCGAGTGTTGTGTGATAACATTGCATGGGGAGTCACTTCACTAGCGTTTGTTGTTATACACGTTTGGTTCTTTACGAAGTCTTATCTGATTAATCGAAGAGTTCAACGAGTTCTTGACGATAACCAACGCCGTTATAAGTGGAGGAACGGGTTGCTTCCATCGTGTGAAGAACTGGTCTCGGGGACTCTTCGCAATTTGTctaatatttcatcttcaccgtCACCCTGCAAGCAAAACCCATCAAAAATACGGCCAAGCTCAGCAGTGCCCAGAAGACTGAcaaataattttgaagcaaatggaGGACAAACTTTGAGAAGCCCCAACAGAAGTTGCTtatatgaaataaaagaaaataatggtGCTTTTACGCGTGATAATGGTAATGTCTTTAATGAGAAGACGATAGGACCTGATACGTGTGTAACACAACACTTGGAAATGGCTGATGAAAAAGCAAAGGTGGAAGCAAATGATGGACTTTGCTGTACAGATTCATGTGCTATATATAAGTACATGGCTACTGCAAGAGAGACACTCACTAAGCATTCGAAGCAGAGAAAGACGTTTGTCTCTGAAGTGTTAGATATGGAcaacatatttgaaaaatttgaagaagaaaatatgaATATGCAAGAACAAGGTACGTGA

Transcript

evm.model.HiC_scaffold_32.349

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54131	Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus OX=9913 GN=CHRNA7 PE=1 SV=1
P22456	Acetylcholine receptor subunit alpha-1-A OS=Xenopus laevis OX=8355 GN=chrna1-a PE=2 SV=1
Q866A2	Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta OX=9544 GN=CHRNA7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002491 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF15236 all species →	CCDC66	Coiled-coil domain-containing protein 66	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR040467 all species →	Domain	CCDC66 domain	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_32.349.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.