Gene detail

Detailed information of evm.model.HiC_scaffold_32.458 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:6082164...6119339
NR annotation: EDO47569.1, predicted protein [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.458

ATGGCTCTAACACATAAGCTAAGAATAGGCCTACGTGGCTTCAACGCTGCAAAGAATGACGTTTGTGCAGTGCTTAGGCCCTCCATGGCCAAGAGACTTCCAACAATGTTTGCCTCGTCGCAAAAGTTTCATGCAATGGCTGAGTTGCCCGAAACACATGAGATGCTTAGGAGAACATGTAGAGACTTTGCTGAGGAGAAGCTAAAGCCTATTGCTGCAGATTTGGATCGAAACCACACTTATCCAGCTGCTCAGGTGAAAGAAATGGGAGAGCTTGGTTTATTGGCAATTGATGTCAAAGAGGAAGATGGAGGGACTGGACTGGACTATTTAGCATATGCCATTGCAATGGAAGAGATTAGTCGAGGATGTGCATCTGCAGGAGTTATTATGAGTGTTAACAATTCTTTATATCTTGGACCGATCCAGAAATGGGGAAATGCATCTCAAAAAGAAAAGTTCATATCACCTTTTTTGAATGGAGATAGAGTTGGCTGTTTTGCTCTAAGTGAGCCAGACAATGGAAGCGATGCTGGTGCAGCAAAAACAATGGCCGTTTTAGATGGTGATCACTGGGTTCTTAATGGTACTAAAGCATGGATAACAAATTCTTTTGAAGCAGAGGCCACTGTTGTGTTTGCGACAACAGACAGAGCAAAGAAACATAAAGGAATTAGTGCATTTCTAGTACCGATGCCAACGCCTGGACTTTCACTGGGGAAGAAAGAAGACAAGCTTGGAATTAGAGCAAGTTCTACTTGCAGCTTGATTTTTGAAGATTGTAGAATTCCCAAAGAAAATCTTCTTGGAGAACTGGGCTTTGGATTCAAAATAGCGATGATGACTCTTGATGCTGGAAGAATAGGTGTTGCTGGTCAGGCTCTTGGTATAGCCCAGGCATCTCTTGATGTTGCTGTTGATTATGCCGATAAACGAATGGCATTTGGATCACCAATTGCCAAACTGCAAGCAATCCAGATGAAAATTGCTGATATGGCTACACGACTTGAAAGTGCACGGTTGCTGACATGGAAGGCAGCGATGCTCAAAGATGCAAATAAAGATTTTACCAAGGAAGCAGCAATGGCCAAACTTGCTGCATCGGAAACTGCAACATTTAACGCACATCAGGCGATACAAATCCTTGGTGGCATGGGATATGTATCAGATATGCCAGCTGAGAGACATTATAGAGATGCAAGAATCACAGAAATATACGAAGGCACGAGTGAAATTCAAAGACTTGTAATCGCTGGAAGGGTCTTTAAGGAATATGCTTCAGTGATGACTTCCAAGCGAGAAGGAAAATGGCCGCTTGAATATGTCGGAGTTTTCGAACATCAAACAGAAATGTCTGGACGACCCCTCACTCATGAAATGGCCCATGTTCATGCATCAGAAGAATCAGATGTAAAAGACTTTAAAACAACACATCAATCTCCCATATTTTTGCAGCCAACGGAGGATGTTGAGAAATTTGAATATGAAGAAGCTGAGAAGCCCAAAAATGCATTGGTAGGCTTAGAAACAGATTCACTCTGTCATGCAAGTACAGAAACTGGCTGTGCTGCAGTCCAGCCCAGGAAGGAGAGAGGGAAGAAGAAAAAcaggaagaggaagaaaaagtcTCAAGGGTCCAAGAAGACACCATTCAGACACAGGGGTGGTCACTGCAAAACATCCTCAAAGCAAGCAAATCCGcacaatgttcttgaaaaaagggagaaaGTGTCTTCTAATAGAAACAGTGGAAAGGATGCTGCTAAAGGGAGGAAACCAAAGGGCAGCCAAAAGCTGGGAGatgatgatgacagtgatcacacagattatgatgatggttttgctggtgatgatgatgatgacaatgatgatgattttggtgatgaagatgaaaattgtGCTAGCTATTGCAGTGAGAACACAGATGTGTCTATGAGTCAAATTGCACAGCCAACACAGTCTGATGTTTCAATGAGATCTGCCCATGCATCATCAAATTTTCAGAGGAATTCTTTTCATCCTGATGCTGGAAATGCTGCAGAAAAAAAAGAAGTCTGTATTCTGCTTGATAGCTATCAAACAGCATGCACCAGGTATTTTGAGAGAAGATGCAAAGATCTGAATTATTTGGAACGTGAAATTGTTAAACGGATTTCTAATTGGGTTGTCCATGTCTCTTACAAGACAGATTGCAATTGTTCTGAAGTGGGGTGCAACCTTGCAAAGAAGCATCTGGAGCATTTAATTCCTCATCAAAGGCTTGATTGCCCTGTTTGTGAAAGAGTTAAGCTCAGCATTTTCCAACATGCAAAAAGCTGTGACATTGAAGATTGCCCAGTCTACCAATGCAGAGATTTCAAGGATATGTTTGGAAaagcagttgccaaaagaagtGTAGAATCAACTGTCTTGCACACGATTACCAAATTGTGGAAGAAAGGACAAACACTTAGACAAGATTTCCATTATGCCTTTCTGTCTAGCCAAAAGTTGGGCAAAGGAAAATTTGGTGTTGTGAATCGCGTGTGGTTCTACGATCTAACAAAAGAAATCGAGGCTGACCTTGCCGTAAAAATGGTGAAGTATGATCCAGTCAAGGAAGCAAGAGTACATGAACTTCTGAGAGAGGATCACCCCAATATCCTCAGTTCAATGGCCATTATTTCCTTCAAAAACGAGATGAAGATAAATGGCTGTGAAGACCCTATCAAAGGGTACATTCTAATGGAATTGGCTGAGTGTACATTGTTTCATTTGAAGAACTCCTTTCCTGATCATCATTTCCCATTGGATGATGCAATCTACTTCATGGCTCAAATTTTCGATGGATTAGCATATTTGCACAGTAAAGGCATTATCCATAAGGACATAAAAGACCTCAACATTCTGGTGACAGAAGGAGGGCAGCGTATCAAACTTGCTGATTGGGACTCGGCAGTGATCTTGGAAGAGGAAATGACAGACAGGCTTCCTCCTCAAGGAACCTATGGGTTCGCTGCGCCAGAGGTTCTCGAATCAAAACCACATTCCACAGCAGCGGATATTTTCAGTGCTGGAGTTACTTGCATCGAATTAAGCATGGGTGGGCAATATCGAAGAAGCAATGAAACCAAagaagaatattatgcaaggaGAGCAAGAAAGATGGCTAAGCTAGAACGTCTTCATCCAGATTTACACGCAGTGATAGCATGGTGCTTAGAGGTTGATCATCGTATGCGACCAACGGCTCTGGAGGTGCGAAACAACCCTATTTTCACACTGGAGTCAAATTACAAAGTGCAAGTGCCGAAAAACTTGTCTTCTCAAACCAGTGACCCCAGCACTAAGATCGACCCCATCACCTTTGATGATATTGCTGGAGATAAGGGAGAAAGAGTGCGTAGCAGAGTGAGAGAAATTGAATCTCATGATGACTCAAGGATACTGGCAATGATGGACGGTTTGCCAAAGAAATTACCAACTGAAAACATACCGGTTTCGAATGATTGGaTTGCAATTCGTGATGTCATGTGCTTGATCACtTGCAGCATTTGcaagaagaaacaaaatgttCACTTTATTGTTCCAGAAGCCAATTTTACTCTGGTTCAGGAAGCTTTTGAAGACGGAGAATGGGGAAGAATGAATGCTAGAGATCGGGGTGCATTATTGTACAAACTTGCAGATCTAATGGATCAACACAGAGAAGAGCTTGCAACAATTGAATCGATTGATTCTGGTGCAGTCTACACTTTGGCATTGAAAACTCACATTGGAATGTCCATCGATACCTTCCGTTACTTCGCTGGATGGTGTGATAAGATCTTGGGCTCAACTATTCCCATCAATCATGCAAGACCCAACAAGAATCTTTGCTACACCAAAAAGGAACCAATTGGCGTTTGTGGTTTGATTGTTCCATGGAATTATCCCTTGATGATGTTGGCGTGGAAGATGGCTCCACTTCTTGCTGCAGGAAACACGGTCGTTCTCAAGCCAGCTCAGgtCACACCAATGACAGCCTTGAAGTTCGCTGAATTGGCTGCTAAGGCTGGATTCCCTAAGGGAGTCATCAACATTGTCCCTGGATCAGGATCAGTCGTTGGTCAAGCCATCTGTGATCATCCCGATATTAGAAAGGTGGGATTCACTGGATCTACACCAATCGGCGCTGGAATCATGAGAAGTGCTGCTGTAAGCAATGTGAAAAGAGTATCTTTGGAGCTTGGTGGCAAATCACCACTGATTATCTTCAATGACTGTGATATGGAAAAGGCAGTCAGACAGgaATTCAAGCTTGTATTTTCAACAAAGGAGAAAACTGTATTGCTGCAGTATTGTAATGACAACGCATTAGGGCATTTTTATCGCAAAATAACGAAGAATAGCCATGAAGAAAACAACGCCCATGAAGAAGACACACTGAACCCCAAATTCTTCGACTGTGGAATTAAAGATTCCTGCACACATGTGGTTATGTTTCAAGATACGAACACCTATGAAATAGTGCATGGTGAAGCAGACTTGAAGAGCATAAAGCGACCAATCAAAGTATGGGAAAAACAAGATGAGAAGCCAAACAAAGAATGGATTGTGATCCAAAGAAGAATCGACGGATCAGTCGATTTTGCTCGCAATTGGACTGATTATAAAATGGGTTTTGGTAACCCTTGTGGAGACTTTTGGATTGGGCTGGAAAAAATGCACTCATTGGCTGGGCCTGGCAAAGGCGCTATCCTTAATATCACAATGAAACACTGGGCTAATCCAAACAAGCTGTTCTATGCAGCGTATACAAAATTCGAGATTGGAAACGAGTGCGATGGATATCGACTGAATGTCGGTGGATATTCTGGAAATGCTGGTGATTCTTTGGCGCATCACAGTGGAAAGAAGTTCTCAACGGATGATAGAGATAATGATCGTTCTCCATGGAGTTGTGCCTCTAAATATAAAGCAGGCTGGTGGTATGATTATTGCTTTTTGGCAAACCTGAATAATGTGTATCATAAAGATAGCTCCACAAGTGAATATTATATGAGCTGGTGGAACATTGCGGGATCTTTTGGCAACATCTTCATGTCTGAGATGAAGATACAAatCAAGgaattgaagaaaatgaaaattggtGATCCTCTTGATCGTTCCACTGACCATGGACCACAAAATCACAGGGCACATCTGGAATCACTCCTCCATTACGTTGAAACCGGGGTCAAAGAAGGAGCAAAGTTGGTCTATGGTGGTAAAAGACTCGACAGAAAGGGATACTTTTTGGAACCAGCTGTGTTTACTAATGTCACAGATGAAATGTTCATTGCTAAAGAAGAATCATTTGGCCCTGTTATGATAATCTCAAAATTCAACAATAATGATATTGATGATGTGGTATTCAGTGCCAACAAAACTGAATATGGTTTAGCTTCAGGTGTCTTTACAAAAGATCTTAGCAAGGCTCTCCAAGTTGCAGACAGACTCGATGCTGGTACTTGCTTTGTAAACACGTACAACAAAACCGACGTTGCAGCTCCGTTTGGAGGATTCAAACAGTCTGGATTTGGAAAAGATCTTGGTTAG

Transcript

evm.model.HiC_scaffold_32.458

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07417	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Acads PE=1 SV=2
P15651	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acads PE=1 SV=2
Q5RAS0	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii OX=9601 GN=ACADS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11699 all species →	ALDEHYDE DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0004029 all species →	Molecular Function	aldehyde dehydrogenase (NAD+) activity	Interproscan
GO:0016155 all species →	Molecular Function	formyltetrahydrofolate dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_32.458.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.