Gene detail

Detailed information of evm.model.HiC_scaffold_32.477 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:6310496...6337689
NR annotation: XP_020894591.1, E3 ubiquitin-protein ligase DTX4 [Exaiptasia diaphana]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.477

ATGGAAATCGGTCCTGCGTATCCTGCATTAGCATTTGCGAAAGTTACGTCATCGCTTGGTCTCGTTTTGAATCCTGCCAACTTCCAAGAATTCCGAGTTCCTTCTTCGACTTCACACTTCACCAATATGGCCGCTGCACGAACGGGATCAGTCGTTGTTTGGGAATGGGAAACAGACATTCCTGGCGTTTATGTTCCATACAGTGTCGACGCAAGTAACTTTATAGAGCAAGAAAGAAACTCGAGGAGCTCTAATGTTAATCTATCTGGTGCTGATTCGTTCCACGCTGCCTGGAAAGTTGATTTGATTCTACATAAACAAGTTGCATTACACGGCAAAGAGCGTGAAGTGCGACGGAAAGTCTACTCATCAAGCTATCCCATTTCCAATGACATAGTTTGGGAATGGAAAGGAGATAATGGTTGGGAACAATTTAGTGTCAAAATTGCAGAAATGATTGAAGATAGGTACAATGATGGTGCTAAAGAATTTGATCTTgagaaaacaaaattgaaaataccAAATACAATCAATTTCAGCAACATGTCCCAGAGAAATAAGTTAACGGGACGAAGTGAGACAGAGTCAGATGAGAGTGATACTTATTGCAGGGACAGTAAAAGCTATAATAAGCAAAATGGTCTTGGTATAATAAATCAGAAAGGTCAAAGAAAGCATTCAAAACAAGCTCAAGCTAGGCAACGTTCATCTAGGGCTGAAGAAGAGAACGATTCTACTGCAAGTGATTCAGATCATGACTGTAGGGAACGTACAAAAGAATCTGCAAAGAGCTATGACTTTGAAGaGTCTGAAGGAGCAACAAAAGTAAATAAGAAAGATAAAAACTGTGTCATTGTTTGGGAATGGGAGACAAATACTCCTGGTGTCTTTGCTCCATACCAagaagaagcaagtaattttttggaaaaagaaTGTAAAGCTGGGAGGAAGATTCTCAACTTAGGGGTGATTGACGAGTTTCATGCAGCTTTGACGGTAGATTTTTCAAGAATGATacaaaaatcaagatattatGgGAGAGAGCGCCAAGTAAGAAGAACATTATATCGTAAAGACAGCTGTCTTGGTAAAGGAGTAGTTTGGGAATACAAGTCTGATCTAGGATGGCAACAGTATCACCCCGATGTCAGTGATCTGACTGAAGATTGTTTCAACAAGGGAGAAAATCAGGTTGACCTCGAAAGAACTCCACAGAAAATGCCGTGTAACATATCGTTTGGAAGATTTGTTCAGGTTGAGAAAAACAATGGTAGAAGCTTATCTGTGAGACGAAGAGTGCTTAGTGCCTCTTATCTAAGTGATGCCGTTGGATCATCGTCGCCAACAAAAGATGCATCTTCTGGAATCATTGGACGTGAGAATTCCTCACCGAGAAAGTCTAGACAAAGAAATGGACGGAAACGATTTGAGAAGAAAAAATCCGAAGAAAAAAAAAGACCAATAAAGCACCAAACTCTTCGTAACTTCTGTCAGCCATGCGACAGTGTTGAAGAAAATGCCGAATGCAGTATTTGTTTAGAGAAGCTGACAGAACATTCATCAGCATTTGGAGAGGACAGTGATAATTCTGTTATTGATCTCAAGAAATGCCATCATAAATTCCACGAGTGTTGCCTGGAAGCACTCTATGAAAATGGCAATAAGGATGGTAGCTTGCAGTGCCCGGTATGCAAGACAATTCATGGTGTAAAACATGGAATTCAACCGCCTGGAACTATGACCGTTACTAGGATGTCAAGATCCGTGCCAGGCTACGAAGGACATGGCTGTATCCAAATAACTTATAGCATAAGCTCTGGAATACAGGGGTCGAATCATCCAAACCCAGGAGCCCCGTACAGGGCCTCTGGATTCCCAAGAATTGCGTATTTGCCGGACAACAGGAAAGGAAACGAGGTTTTGAGACTGCTTCAAACTGCTTGGGACCGAAAACTTATTTTCACAATTGCAACTTCGGTAACAACTGGTGCACAAAATGCGGTTGTATGGAACGAGATTCATCACAAGACTGAGGGATTCAGCAATAATTCTGGCCATGGGTATCCAGACCCTAATTATCTGGACAATGTGTTACAGGAACTGAAATTGCAAGGAAAGCTGTCGGAAAAGTACGAAAATTTTGCAAGATTTGTGCGCATTTCTGGAGATGGACGAGGACACGTCAATTTCAAAGATCCGGAAGCTTTACGGGAATTGACATACACTTTGTTAAAAGAAGACTTTAATCTATCATTGGATATACCACTCGACAGGCTTATTCCGACACTTTCTCTTCGTCTAAATTACATTCACTGGATTGAAGATTTGCTgatgaaaatcaataaaacaagTTTAAATACAAAAATTGCTGGAGATGAAAAAGATCCTACAGTTTGGGGTGTTGACATTGGCTGTGGTGCTTCATGTATTTATCCACTACTTGGAGTAAAGATGAACAACTGGAAATTCATTGCAGCAGAGTTGGATGATTTATCGTTGAGTTATGCTGCAAACAATATAAACATTAACAATATGAGTGACAGTATCTTTcttaagaaaaatgaaaaggaaagcATTCTAGTAGGAAGCTTGGATGAAAATCAGACTTATGACTTTTGCATGTGCAATCCTCCATTTTTCGGAGACAGAGAAGAAGCTTCTGGAGATAGGTCAAGATCAGACAGAAGACCACTGCCATCGACATTTTCCACTGCAACTGAAAATGAGAGCATTACTGAAGGAGGGGAAGTGGCCTTTGTGAAGAAGATGATTGATGAGAGTTTGCAGTTAAAGGGAAAGATAAGGCTGTATACATCCATGCTTGGCAAGAAGAAAAGCCTTAAAACGTTAAAGCAATACCTTCATAAACTTCAGATAAACTTCTCCGAGACATCTGTGTTTGATTCTTGTGGAAATTTCGAGCATCGCCTTAATGGCGAAGCGTTCAAAAACACTTGGGTCCATCAACGACGCCAGAGACGAATATCTAAGAAAATGAAGACGAAAACTGACGATGGGATGGAACAAAACGAGTATTCTGGACGAACACCCAAGATACCCTCTAAGTTTGGTAATGATCGGCTGCTGAACTGA

Transcript

evm.model.HiC_scaffold_32.477

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86UW9	Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens OX=9606 GN=DTX2 PE=1 SV=3
Q9CQG2	RNA N(6)-adenosine-methyltransferase METTL16 OS=Mus musculus OX=10090 GN=Mettl16 PE=1 SV=1
Q86W50	RNA N(6)-adenosine-methyltransferase METTL16 OS=Homo sapiens OX=9606 GN=METTL16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000869 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05971 all species →	Methyltransf_10	RNA methyltransferase	Family	Interproscan
PF02825 all species →	WWE	WWE domain	Family	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004170 all species →	Domain	WWE domain	Interproscan
IPR037197 all species →	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR010286 all species →	Family	METTL16/RlmF family	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018123 all species →	Domain	WWE domain, subgroup	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13393 all species →	SAM-DEPENDENT METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0052907 all species →	Molecular Function	23S rRNA (adenine(1618)-N(6))-methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_32.477.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.