Gene detail

Detailed information of evm.model.HiC_scaffold_32.530 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:6903978...6926322
NR annotation: XP_022807549.1, membrane-associated phosphatidylinositol transfer protein 2-like isoform X2 [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.530

ATGGTGCTTGCCAAGGAATACAGAATTCCATTGCCACTAAGTTTGGAAGAGTACAGAATTGCTCAGCTGTATATGATTCAGaaaaagagTCGTCTCGAAAGCACTGGTGAAGGAAGCAGAGTTGAGATCCTAAAAAATGTGCCATACACGAATGGACCTGGTGGCAGTGGACAGTATACAAAGAAGATCTATCATATTGGTAGTCATATCCCTGGATGGTTAAAATCATTCCTCCCAAAGACAGCATTACGAGTTGAAGAAGAAGCATGGAATGCATACCCGTATACAAAAACACGAACTACGTGTCCATTTGTTGATAAATTCTATATTGATGTGGAGACTTATTACCATTCAGATGCTGGTTTATTGGAGAATGTTTTCAATCTGCCACCTTCAGACAGAGCAAGGATCCCAGTAGATTTGATCGACCCAGTGAAAGATCCATTTCCTTCAAATGTTTACAAGTCGGAAGAAGACCCCAAGAAGTTCGTATCGCGTAAAACCAAACGAGGTCCACTCCATGAAGACTGGCTGTATGATTACGTAAAAGAACCATCAAACAAAGAAGTAATGTGCGCTTATAAACTCATAACTGTCGAATTCAAATACTGGGGAATTCAGGACGAATGGTGTCATTTGACGATTAACGATATTCGAGCACTTGAGCTAAACCTTCAACAGGATCTGTCTAAAACCGGCGAGACACAAGAGAGCGATAAGGACGACGAAAATAGTAAGCCAGAGGCGACAATGAGATTATCGCGAGCTGAGCTGACTTTATATAAAGATTCTCCAAAGGAAATCAAGCGGAGATCGAAACAAGCGACTGAGGAGATTATTCTTGGATTGAGGATGACAAGTATTGAAGAAGCGTCTGATTCGAGTTATGAAACGCCTGAAAGTGACGATGAATATGTGGATGCGTTAGAGGATTTCAAAGACAGTTTCAAAGAGTTCGAACCACCTGCCATCCCTGTAGAATCTGCAAATGAACGTCTAACTGGAATCAGTTATTTCTCGTCTCAAGATTCAGCTGAAGCAGCGAGTATGAGTTTTCAGGAAAGTTCTTCGAGAAAACAGGAACCATCGGGTTCAATTGAAAGCTCAAGTTCTGTTCTGTTGCTCATCTTCCATGGCGGTGGGGTTGCTGATATTGAAGTTGATTCTTATCCAAAAATACGAGATTTCAAGACTTTTCAATCCGTATTTACATCAGTTTCCTCGCTTCTGTATCCATCTGCAAGTCAAAGTGTTGCTCTAAGGCTTGTGGAGTGCCCGTCAATGTGTCCACAAATCGTCGAAAATCTAAGGAAAATTTCAGTGTTTTCTGAAGAGAAACCCTCGTCTGGAGACATTGGCTGGCTACCTCCAACCTTCCCCTTGTCGTGTATACCTCTTCTATTGGTATCTTCATTAGAGTTTTATCAAGGTGTTGAAAATGTCATCAAAGAGGGAAATGCTGTTTTCAAGAAATTCGTTGAATCGTCAAAACtagagaaagatgaaattaagGTGTGCATTCTGGCTGACTGTGTTGGTGCGTTACTAGTCTACGGTGCATTGTGCAGTCAAGGGAACAGATCTACAGGAGTGAGCACTGATTCACTAATTGTTAATTGTGCGGCAGATAATGCAAGTGATAAAATCAGTTTAAATTCAACAACACAAAGATATCCGCCATGTCAACGAAGCTCAAGTATCGACTCATCTGGGTTGTCACAGGTGTCCCTGTTCAAGAGTTTTAATCAATTCGATTTTGACGTTTCAAGTTTTTTCTGCTGTGGATCCCCTATTGGCATGATCCTTATGAAACAATATTTCGAAAGCAATGGAATTCTACCTACCAAACCTTACTGTGAACAAGTATTCAACGTCTTCCTGCCTTTCGATCCAGTGGCCTCAAGACTTGAGCCTCTCATTGAAGGTTCATTTTCTCGTACAGAGCCTGTTCGTGTGCCTCGTTATCAAACATTCCCGTTCAGCAGAGAGATTTTATATGGGACGCGTTCGTACGATGCACAGAAATGGACCAATGAGAAAGAGGAACCTACTACACCAACTGAAAGCATGTGTAATGTGAATGGTGAAGATAATTGCTCTTATGAAAATTGTGATGGTTCAGGTTGTGTAGAAAGCCAAGGACATATGATGAAGTCAGAGAACTGGTGGGGTTCAAAACGAATTGATTACATGCTGTATTGTCCGGATGGCCTCCAGCAGTTTCCATTTTCTGCCTTGACGCAACTTTGTTACAGTAGCTATTGGGAGTCAAGGGATATGGCTGCTTTTATTCTGTGGCAGATATTGGATGAAAATGCTGCAGTTCATTTAGACACTTTATCATTCGGGACAACAACATTTCAGCCAGTTAATGCTAAGGAAAAATGGATAAAGAAACGAACATCGTTGAAGATAAAGAACATGCATCCTAACCACCGTGCAAATGACATAATCTCATTGGAAGGAAGCATCATACAACTAAGTGGCAAATTCGTTTATGGTCCAATTGAAGTCGCTTCGTTAACAGGAGAAAAGGTTGACGTGTACATGTCTTTGCATCGTCAAATGGAAAACTGGAAACTCCTGGGCAGTGGCTTAACAGACGTACATGGTCGCCTCAATTTTCCAGTGCCTGAAACTGAGATTATTCCACAGGGCATTCATGCTGTAAAAATGGTTGTTAGGGGTGATCACTCAAGTCTCGACTGTAATCTAGCAGTGATTCCACGTGGAACAGAGGCTGTTGTTTTCAGCATTGATGGATCTTTTCTCGCTGCATATTCTTTTCGAGCAATTGATCCGAAAATAAGAGGAGGGGCTGTTGATGTTGTAAGGCATTGGCAAGAACTAGGTTACCTAATCATCTATGTCACGAGTCGAttattatttcaaaaacatcaagttATGGGCTGGCTGGCTCAGCATAACTTTCCATTTGGTATCGTCTCATTTTGTGAAAGCATAAGAAAAGATTATCAGCGGCATAAGCAGGAATTTTTACGTTCATTAGTGAAAGAGGGGGCTGTATCGATTCATGCAGCTTATGGTTCGTCAAGAGACATTCCAATCTTCACATCGCTCGGTTTAACAAAAGAACAGATTTTTATTGTTGGAAAAACGAAACAACAAAAACACGCAGAGAATATACAGGTAATCAACGAAGGATATGCTTCACATTTATCAGAGCTCCCAATGCATTCGCTATCCCATCATGCAACAGGACAGATATGCTCAGTGTTGCCATGGACGTGTTTTGGCATTCCTGCTTCGAACAGCAAAACAGCCGTAAGGAACAGAGCCTCAAGTATGAGATTTAAAGTTTTTAACAggaaaaaatcacaaaatgacAAACCGGACGAGGAAAGTAACACTATTTCTAATGATACTCAAATTGCTAGATCCGTTTCGGGTTCATCTCGGCTTAGGCCAAGAAGATGA

Transcript

evm.model.HiC_scaffold_32.530

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43125	Protein retinal degeneration B OS=Drosophila melanogaster OX=7227 GN=rdgB PE=1 SV=2
Q9BZ72	Membrane-associated phosphatidylinositol transfer protein 2 OS=Homo sapiens OX=9606 GN=PITPNM2 PE=1 SV=1
O00562	Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens OX=9606 GN=PITPNM1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004721 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031315 all species →	Domain	LNS2/PITP	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24069	PITPNM; membrane-associated phosphatidylinositol transfer protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.