Gene detail

Detailed information of evm.model.HiC_scaffold_32.87 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:1157951...1175558
NR annotation: MBN3311648.1, TRM2A methyltransferase [Atractosteus spatula]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_32.87

ATGGACAGCAGAATTGAAAATATCATATTCGCTGTACTTGTTTTGCTTTCCTTGCTTCTTGTGGTAATAGCAGAAACAACTGATTTCTGGTACAAAGGCAGCAGTTACCAAAATATCCATCAAGGATTATGGCGTTCTTGTCATATGTTCACAAGAACGGATACAGAGTTGTGCATAAAGCTTGATACTGTTCCAGTGACCGTTCATGTGACACGTGCAGCGTTAATATTAGCAACAATTGGGTATGTTGGTGCATTGGCTTTATTGTATTTGGTGAAAGCAAAAATGATCAAAAATACAAGACTGCCTGCAGTGACATGCTTCTTTCCATTTGGCAGTGTATTGATTGGTATGATAACCTACACCGCTGAACTACTGGTGGAATCAGAATATCGACAAATGAAGTTTGCATGGTCTTATTACTTGGGATGGTGCTCATTAATTGGTATCCTAGTTGCTATTGTATTTGATACTAGAGAGAGAATAACTGTAGATCATGGAGATGAGCATGAAAAGAAActtgatgttgataatgttgatggtgatgaatGTGAGGCACCTTCAAAAAGCACGTGTGTTGAACTTGAGGAGTCAGAGTTAGGTCCAGTTGACAACATAAATGCAGAAGAATGCAATGACGTGCTAGAAAATCAaaatgagaaagaaaaagaagagaaagatgACCTGTATTTTTATACAAAAAGTGGAGATTTCACttcagaaatattcaagatttGTGTTGAAAATGTTCCAAAATTTGTTGGATATCAGCAATTGAAAAAGacttttgaaaaaatgaatgTAGAAGCTAGAAAAGTAAAGTTGGACTTCAACTCTAGATGTGCATATCTTACATTCAGgTCGGAGGAAGAAAGAGAGGAAGCAATCAAGACGATCACTGGCTACTCTTTGAAAAATCACATCCTTACTGCAAAGAAAGCAAAACCTAAGCCAGATCCACTGTTAAAAAGAAGACAAATGCAGAATCAAGATAGCCCACATCCTAAGAAATCGAAGCAGGATTCTGAGAAAATTGAAGATGATTTACCTCCGGAGAAAAGggTCGTCCGCGTAGTAACGAATCTCTATGATATGCCATATGATGAACAGCTAAAGCTCAAGGAAGAAATTGTAAAAGGCATCCTTAAACGTCTGACAAAAGACTTGCTCTCAGCAAATGCTggaaaatgGGTAAAGGAAAACAGCCGGAATGACGATAGAATTTGTTGCCCTGTTGATGAAATAATTCCTTCGCCTGTTCTTAACCATTATCGGAATAAAGTGGAGTATAACATTGGACCAGGTGTCGCAAATGAAGGAGCAACAGTTGGTTTTAGACTTGGCACTTATAAAGACGATAATTTCGCAGTTGTCAGTCCATCTGAGTGTATCAATGTGTCAAAAGAAGCCAAATACATTGCTAAGTTGTTTCAAGATTATATAAGAAAATCAGACAGAGACTGCTATGATGCAGGGAAACACACAGGATGTTGGCGGCAGTTGACTGTAAGAAGTTGCTGCTCGGGTGATGTCATGGTCATCGTTCAAATTCATCCTCAGACAATGTCAGATGCTGAAATTGAGAGCTTAAAGAGCTCTTTGAAAGACCTTTTCTTTTCTGAGTCAAACAATACTCCCGTTACTTCACTGTACCTTCAAAAATGTGGCCAAAAACAATCTGGCGAAAATATAAGTGAAACGTATGAACATATCTATGGTAGCAAGACGATACAAGAACACATGATGGATATGAAGTTCAGAATTTCTCCAGACGCATTTTTTCAAGTTAACACACCTGCTGCTGAAGCTCTCTACTCTAAAGTAAGAGAATGGTGTAAAATTACTGAAGATACCACAGTTTTAGATGTTTGTTGTGGCACTGGAACGATAGGACTTGCCATAGCAAAGAATGGAGTAAAAAGAGTTATTGGAATTGAATTGTGTCAACAAGCAGTAGATGATGCAAAACATAATGCTGAAATCAATGGAATAAACAATGTTGAATTCATATGTGGAAAGGCAGAAGATTTCCTGTATAATGTGACAAAACGCCTTGATTGTACTGATGCAGTAGCTGTCGTAGATCCTCCGAGAGCTGGACTTCATAAAAGAGTTGTACTGGCATTAAGGCAATGTCCTGCAATCAAAAGACTTGTATATGTTTCATGCAACCCTAAACAAGCAGCTAATAACTTTTTAGATTTATGCAGACCCAGAACGAATCGAAACAAAGGGGAGCCATTCAGACTCCTAAGAGCTGTACCAGTGGATCTGTTTCCCCACACGAAACACTGTGAACTTATTCTACTCATGGAACGAATAGATGATCAAAGTGAGGATGATACagttttaaatcaaaataacgAAGAAAAGCAACTGACTAATTTAGAGTTAGAATCAAAAAGTGAACTTGGAGATATAGAGGATAAAGACAATAAAAACTTTGCAGATGATAATTTTTGTAATAGTGATGCAAATGATTAA

Transcript

evm.model.HiC_scaffold_32.87

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BNV1	tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus OX=10090 GN=Trmt2a PE=1 SV=2
Q8IZ69	tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens OX=9606 GN=TRMT2A PE=1 SV=2
Q96GJ1	tRNA (uracil-5-)-methyltransferase homolog B OS=Homo sapiens OX=9606 GN=TRMT2B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003170 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00822 all species →	PMP22_Claudin	PMP-22/EMP/MP20/Claudin family	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF05958 all species →	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR010280 all species →	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR045850 all species →	Family	tRNA (uracil(54)-C(5))-methyltransferase, metazoa type	Interproscan
IPR030390 all species →	Active_site	RNA methyltransferase TrmA, active site	Interproscan
IPR004031 all species →	Family	PMP-22/EMP/MP20/Claudin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45904 all species →	TRNA (URACIL-5-)-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15332	TRMT2A; tRNA (uracil-5-)-methyltransferase	EC:2.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.