Genomic Location: HiC_scaffold_33:1214171...1222060
NR annotation: XP_048579760.1, signal recognition particle 54 kDa protein [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_33.88 |
| Transcript |
| evm.model.HiC_scaffold_33.88 |
| Protein |
| evm.model.HiC_scaffold_33.88 |
| UniProt accession | Description |
|---|---|
| Q7ZVN5 | Signal recognition particle subunit SRP54 OS=Danio rerio OX=7955 GN=srp54 PE=2 SV=1 |
| P14576 | Signal recognition particle subunit SRP54 OS=Mus musculus OX=10090 GN=Srp54 PE=1 SV=2 |
| Q2T9U1 | Signal recognition particle subunit SRP54 OS=Bos taurus OX=9913 GN=SRP54 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003673 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02881 all species → | SRP54_N | SRP54-type protein, helical bundle domain | Domain | Interproscan |
| PF00448 all species → | SRP54 | SRP54-type protein, GTPase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013822 all species → | Domain | Signal recognition particle SRP54, helical bundle | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR022941 all species → | Family | Signal recognition particle, SRP54 subunit | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR000897 all species → | Domain | Signal recognition particle, SRP54 subunit, GTPase domain | Interproscan |
| IPR036225 all species → | Homologous_superfamily | SRP/SRP receptor, N-terminal | Interproscan |
| IPR042101 all species → | Homologous_superfamily | Signal recognition particle SRP54, N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11564 all species → | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0006614 all species → | Biological Process | SRP-dependent cotranslational protein targeting to membrane | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0005786 all species → | Cellular Component | signal recognition particle, endoplasmic reticulum targeting | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006616 all species → | Biological Process | SRP-dependent cotranslational protein targeting to membrane, translocation | Interproscan |
| GO:0008312 all species → | Molecular Function | 7S RNA binding | Interproscan |
| GO:0030942 all species → | Molecular Function | endoplasmic reticulum signal peptide binding | Interproscan |
| GO:0048500 all species → | Cellular Component | signal recognition particle | Interproscan |
evm.model.HiC_scaffold_33.88.Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
