Gene detail

Detailed information of evm.model.HiC_scaffold_331.22 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_331:327134...335720
NR annotation: RVE40865.1, hypothetical protein evm_014484 [Chilo suppressalis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_331.22

ATGAAGAAGGCAAGTAAATCAAAACCGTACGAGCAGAAGTTCAGAGACGAGTGGTTGTTGGATTCAAATAGAAAAAAATGGCTTGATAAAACAAAAACGAATAGTGCATACTGCAAGTGGTGCAAATGTGAGATAACACCGAAACTCAGCGTCATAACGCAACACGAAAAGAGTAATCGACATCAAGGTTTTGTGTCCAGTTCCTCTGGCACTAATAAAGTGGCAtcatattttcagaaaaatgtaaaTATTAACGAAGAAACCAAAAGAGCAGAGCTTATGATTACAGCATTCATAGTTGATCACAACATTCCGTTTAGGGTGATGGATCACCTCTCAGAAGTTTTGCCAAGGGCCTTTCATGACTCAGCAATAGCAAAAGAATTCGCTTGCAAAAGAACCAAAGCCACCTGTTTAGCATACAATGTTTTAGGAGAAGAATTCAAGACTGCGGTGGTAAAAGATATCATGAACACAAAACACTTCTCAGTTATTATTGATGAATCAACCGACCGTTCCACAACTAAATCATTGGCTGTTGCTGTgaagtatttttcaatgaaaactgAAAGTGTTCAGACAAAGCTCTTGAATTTGATTCCTGTTGCTTCTGGAACAGCAGAAGATCTTTTTGAGATGCTAAGCACAGAGCTTCAAAAGAATCATCTCAGTATCGAAAACCTCATTGGATTCTCTGCTGACACAACAAATGTAATGTTCGGAAGCAACAATTCAATTGTAACACGTATCAAAGAAGCCAGCCCATCTTGTCTTGTTCTGAAATGTGTGTGCCATTCAACTGCACTCAGCGTTAGCCACGCTTCGAAAGTATTGCCAAGAAGCATTGACCAATTGATTCGGGacatttataattatttttcgCAATCAGCAAAGAGAATGGATGAATTTAAAgaatttcaagagtttacaGACACTCCGCAACACAGAATTCTACGATTCTATGATATAAGATGGCTGTCTCTAGGAGCGTGCGTAGGAAGAATTCTAGAGCAATGGTCTGCATTAACCTTGTTCTTCCAAGGACAGTGCTTAATTGACAGAATTCAAGCGTCAGAAAAGATTGCTGTAGAGTTGGGATGCATTTTTAACAAGTTTTACTTTACATTTCTTGATTTTATATTGTATCTCACGAATAAATTGAACACACTGTTTCAAAGTCAAAGCCCCAAAATTCACCAGGTCTACACAGACTGCATTTCTGTGTATAAGTCGgtagtttcttgttttttaaaaagagaTGTGATTAGATGCTCGGACAGCGAGTTGTTCAGTCTGGATCCGGGAAATCAGGCCTTTCATGTTGAGCTGCATCAAGTCTACTTTGGTAGCAATATCACAAAAATCATGCTTGCCCCAGCTTTCACAAGTAAACCAGCAGCAGCTCGACAGGAAGTTTTACAGCGGTGCAAGGATTTTCTGGTTACCCTGGCAAAGGAGCTCAAGAAGAGATTGCCAATCAATGGAATCATGCGTGACCTCAGGTTTCTACAACCACAAGTTGCAATCTCTGGTGAAATCGCATCCATCGTTCCTATGTTGGAAAATTTGCCAGACATCATTGAACAAGAACTTCACCAAGAACTGGACATGCAATGGCGACAAATGGCGATGGACAGTGAAGTTCCATACATGCTCACAGGGCCCAATGGTGAATCAATAAATGTGACAGAGTTCTGGGTCAATATTGGTAAGAAAGATGGATTCGCACTGGTATCATTACTAGCTAAAAAACTGCTTTCCTTGCCTGTTTCCAATGTTGCCTGTGAGCGGATTTTTTCGCAAGTAAATTTATTGAAAACAAATCAACGAAATAGATTTACTGTCCCTGGTGTTGCAGCCCACCTGTTTGCTAAAGATGGGATCCGTGAAGGTGAAGAGAACAACTGTACCAACTTTGAACCAACAAAGTCcatgaagaaaaaaatgaacCAAGACATGTACACAAAGTTTCTGAAATTTACCCCATGTCCtcttatttttctatttcttattgacagaaaaacaaaaatggcAGGAATTGCAAACACAGCAgcaaagatctttgtttcaagaAAGCTACCTGATGCAGCATTAGAATTGCTCTTAGCCTCGAGGCACAAAGTTGAAGTATGGCCACACCCTGAGTCAACCATTCCCAGGaagacattgcttgaaaaggtGTCTGGTATCGATGGATTGTTATGCTTGTTGACAGAAAAAGTTGATTCTGAATTGCTCAATGCCGCAGGTTCACAGTTGAAAGTTGTCAGCACTATGTCAGTTGGTTTTGACCATGTAGATTGCTCtgaattgaagaaaagaaatattctCTTGGGAAATACTCCTGATGTATTGACAGATGCTACAGCAGACCTGACGATGGCCTTGTTACTTGCAACTTCAAGGAGACTTCTAGAGGCCAACAAAGCTGCCAAGGAgGGGCAGTGGGGAACATGGAGTCCGTTATGGATGTGTGGAAGTAATCTGAAAGACAGCACTATTGGAGTTTTTGGATTAGGCAGAATAGGTTGTGCTGTTTCAAGAAGACTGAAACCTTTTGGTGTTAAAGAAATCCTTTATAACCAAGATGTAGAATTTCCAACTGCTGCAAAAGACGTAGGCGCAAAATTTGGTGAGtaa

Transcript

evm.model.HiC_scaffold_331.22

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBQ7	Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens OX=9606 GN=GRHPR PE=1 SV=1
Q91Z53	Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus OX=10090 GN=Grhpr PE=1 SV=1
Q5JEZ2	Glyoxylate reductase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=gyaR PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02826 all species →	2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	Domain	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF00389 all species →	2-Hacid_dh	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006140 all species →	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR006139 all species →	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37162 all species →	HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_331.22.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.