Gene detail

Detailed information of evm.model.HiC_scaffold_335.37 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_335:561547...567266
NR annotation: XP_028393233.1, LOW QUALITY PROTEIN: protein lin-52 homolog [Dendronephthya gigantea]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5NVP8	Protein lin-52 homolog OS=Pongo abelii OX=9601 GN=LIN52 PE=3 SV=1
A0AUQ6	Protein lin-52 homolog OS=Danio rerio OX=7955 GN=lin52 PE=3 SV=1
Q5ZJQ3	Protein lin-52 homolog OS=Gallus gallus OX=9031 GN=LIN52 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008898 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10044 all species →	LIN52	Retinal tissue protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018737 all species →	Family	Protein LIN52	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31489 all species →	LIN52 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070176 all species →	Cellular Component	DRM complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21775	LIN52; protein lin-52	-	Cellular senescence	ko04218	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.