Gene detail

Detailed information of evm.model.HiC_scaffold_337.73 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_337:557850...561129
NR annotation: XP_044174700.1, uncharacterized protein LOC114970341 [Acropora millepora]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_337.73

ATGAAAGCTATTCAGAAAGACTTGCAATCTTCAAAAGATGAATTTCTATCTTACGGAGTGAATAAGCAACGTTTTATTAACTTGTTGAGTGGGAAGTTAATTGCAGCTGGCTGCAATACTGCAGTTAATGCAATGGGAGATGCAGATTTTCTTATCGTAAAAACTGCAATTGAAGAGGCAAAACTACAACCTGTTGCAGTTATTGGAGTGGACACAGATCTACTGGTGTTTCTGTGCTTTCATACAGAAGTTGAGGATCACGACATTGTTTTCTACTCAGAGGCTaagcaaaaatcaaaaaagGGAAGCATTTGGGACATAAAACAGACTAAACGTGCAATTGGTTTGGACGAATGTTGCCTCCTTCCTATTATACATGCGATATCGTCAAGTcgtgatttcaatttcaaagaTCTCCCGTCTCTTGTGGATGCAGCAAAAAGAACCGAATCACGCAATCCACCTGATCTCTCCGCTTCATCCGCCTGTGAACCTGAAATTCTCATGCATCAAGCCACAACTCAGcagaattttcaaagaaatcaacTCAGAAATTCGTCAACAAATACAAATCCAGAATCAAGATCTTCTAGACAATCAGGtgaaagaatttgttttacTATAACAATTTTCTTAAGGCCAATTGTGAGCAAGCAGGAAATCGCTGTAAACGCCGTTTTATCCATAAATGCAGTGTTTGTTTTAAACCAAATTGTAAGGCGCTTAATCATTCGGAAACTCGTAATTCAAATTCTAATGCTAGAAGtagtaattttcaaaattgctcTCGTGATACTCCTGCAATTAATGGCAATGTTACTGAGACACAAGTCTCTAATAACGCTGATAACGTTCACAATTTGCAGAGTATTGCAAATACACTTAGTGATTCTTTTTCATACTACTCCTTTGGTAGAAACTCTTGAGCACCGCCTTCCCAACCCCACCCAGCCCTCCCAGTCTTCGGACACCTCGCAAGACCCAATTTTTGGGATGCCTGCCATCACCGCCGTTTCCACCAATTTGCAACTTTCGGAACTCGGTCTTgtgaaaaaaaacattttgtggGGTAAAGTTTCTTCTGCGGGGGTTTCCCTCCCTTTGCCTTTGGACAGTTGCTGCTCTGTGTCCCTCGTCAGTCAATCGCACGCTGACGTCGTTGCCCAACATTCTCCCCACCTTAAATTTACCAAGCTAGAGCAGCCCCTTCAGGTTACCGCTGCTGGTCCCAGTTCAACTCTTAAAGCTGTTGGGATCATGCAAATTCCTATTAGGTGGGAAAACGGTCGCTCAGCCACGTTTTCAATGTTAGTCGTACCGCATCTCACATGGCTAATTTTATTCGGGCAGAATCATTTACGTTTAGTAGATGCGCATATTCATTCTCGTGCTCTTAAGGTGCATTTTGCAGATCCTGCGCTCAATTTTCAGATATCGTGTTATGATAGTAACCCATTAGAGCATTTTCCATCGCTCAGAGGTCAGAATTCCAGCACTGCCTCCTCAGTCAATCTCACGTGCTTATTGACTGCTATGCCAACGCCCTCCAAACCTAGGGAACCCATCGTGCTTTCCAAGGGGTTTAATTTGGTTACTGTTTGCCTGGTTTTAACTGCCTCCCTTGTAGGCTCGTCGCTTTTTTCTGGGCCCCTCTGGCTGGATGGCAATAGTATTTTTCCTGGGGTAGAAACTCTTAGTGGCCCAACAAAATTTTCGGCTTTTCGAAGCATGGTTGATCTTGAGTTGGCTGTCAACAAGGTTAGCAACAAAATTTCACCCGCGGCCACTCACCCCTTGGGGCTCGATTCTTCTTTGTTGTCCCCTTTTCTGGATTGCTCGCCGCCGGAGCCTTCAACCGCTCTCCCACCCACGGATAAGGTAGTTTTAGAGCCCTCCTCGGAAGCTTATTATCAGAAATTAGTCGAAATCTTGGTATTGGACACTGAAGCTTATACGCATGTTCCTGCAGATATAATGCTTGCTTTTAAAGCCCTTTTGCGCAAATATCCTCACGCCTTTTATCTGCCAAATTCACCTCTTTCTCCTATGAAAGGCTTTGTCCACAACATCGACACAGGCGATTCTCCACCGGTTTATCGTTTACCTTATCGTAAGAGTCCATCTGAACTCTCTGCCATCAAAGCTGAGCTTCAACGCATGCTAGAACTCAACATTATTCGTCCTAGCCACTCTGCCTGGGGTGCACCTTGCATCCTTGTGCGTAAACCTCTCGAAAAAGGCCGGCCACAGCCGCCACATTTTGTTGTTGATTACAGAGGCCTCAATGCTGTTACCTCCGGGGATGGATATCCCATTCCCTCTGTTGCCAACATTTTGGACGTTATTACCGGGGGTAAATACTTTGCCAAACGTGACCTCGCCAGCGGATACTGGCAGGTCCCTGTTAATTCAAAGCATCAACGCAAAACAGCCTTTGCAACTCATCTCGGCCTCTATGAATTTCTCCGCATGCCCTTTGGCCTCAAAACAGCACCACAAACGTTTCAAAGGATCTTGAACACAGTGTTCTCTGATTATCTCTATCAATGGCTAATCATCTACATTGATGATTGCATTTCCTGGTCCTCGTCTTTCTCAGATTGTTTACAACATTATGAGAAACTTTTTCAACGTGCTGTGAAATTTGGAGTACAATTTAAACCCtcgaaatgtttctttttctccACCAATTTACAAGTCTTAGGACACAGGATTACTCCTGAAGGCCGTTTTCCATCGGAAAAGGGGAACCGAAGCCATTTCAGAATTTCCTCGCCCTCGAAATATTTCTGA

Transcript

evm.model.HiC_scaffold_337.73

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.HiC_scaffold_337.73. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_337.73.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.