Detailed information of evm.model.HiC_scaffold_34.41 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_34:469544...472490
NR annotation: XP_002156482.1, vacuolar protein-sorting-associated protein 25 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7JXV9Vacuolar protein-sorting-associated protein 25 OS=Drosophila melanogaster OX=7227 GN=Vps25 PE=1 SV=1
Q6AX45Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008224 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.HiC_scaffold_34.41. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR008570
all species →		FamilyESCRT-II complex, Vps25 subunitInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13149
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000814
all species →		Cellular ComponentESCRT II complexInterproscan
GO:0005198
all species →		Molecular Functionstructural molecule activityInterproscan
GO:0042803
all species →		Molecular Functionprotein homodimerization activityInterproscan
GO:0043328
all species →		Biological Processprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayInterproscan
GO:0071985
all species →		Biological Processmultivesicular body sorting pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_34.41.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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