Gene detail

Detailed information of evm.model.HiC_scaffold_348.9 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_348:73814...88894
NR annotation: XP_022791036.1, TALPID3 protein-like [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_348.9

atgtttgaccgaaaATGGTTGATCGTTGGGCCAGGGCCTTGGTTGTACGCTCTATTAATTATGAACTTAATTCATCTACAGAATGAACAGTCCTTTCAGACTCCGCCCAAGCAAGAAGACtatgcaaattttcaaaattacatAGCAACAAACGAAATTGAAAGAGAAGTTGAAAGCGACACTGCAAACACAACGGAGGAAAATTTGGGAATACAATTTCATGGAATCGAAGGTGCTGCACCTAAAGAATACAATGAGCCTCCTTTTCCACCACAGCAACctcattttgaaaatgaagcaGATGCAGTGGAAATTCAGAGTAGGCTGACAGTGGAGGAGAAAGCTCAGGAATGGGTTGAACAAGAAATACTTGCAAGAATAATGAGTCAAATGAATGTCCCAGTTGACCCAACATTGGTGGCACCAGCTGAAAGGAGTATTGTGAGCGAGACAAGCTCTTTATCAGATGAAGAGGAACACAACTGGATTCACGACTTAATTGGACCTTCTGGACTTCAATTATTCGTTGACTCTGGCCTGCCAATAGATAATGAAATAATCCAAGAATTAATCAGAGATGTTATAGCTGAAAGATTAAAAACACTTCTTGGTCATCCAAAGCAAAAAACAACGAATGAAAGTAAAAAGGTTGCACAAGAAGAACATGATTCACAGCTATCTGCACCTTCTATTGTTTCAACGCCGATTCAGACGCCAGTATACACCCCAGTACCATCAGAGGCTCCCAGTATTCAAACACCGACAGCGTCTTGTGTCTCACCAGAAAGCAGCGAGGAGAGCATTTTAtcaattgcagaagaaaaagagaagactTCATCGGAGCCCGAGAACTTTAAGGACCAACACGAACAGTCTATGCTGACAACTCCACCACAGACGCCTAAAAGTCAGAGAAAGTTCTCTGCGCTTGAACAACACTTGGAGACACCAGTTTCGTCTCTCAAAGAAGATGAGGAACAAACAGAAAGATCCCTGGCACGCACTCCTGAGACATCCCTATTGAATGAAACTCTCATCTCACAGAGTGAATTTGAAAGAAGTGGAACCATAAtcgaaacagaagaagaaaagacacCTACAGCAAGCCCTCCATCTTCAGAACCCATTCAAACCTTCCCAAAGCCAATTGTCAACGTCATTAGGAAATCACCAAGTCCAAAGACGAGCAGTTTTACGATATCATCAAGCACAACTATCGGTAGCAGCTTGTTTGAGGGAATCTCCGAAGGGGAGCACCTCTGTCCTGATAGTGTTATACCTGGATTATACAGTGAGGGTGAATTCCCTGTGTCTGAAGGTCAAGCGATACTTTCACCTGTCAATGAATTGGAAGAAGacgagaaaacaaacttcaaaCAACTGCTTCAGAAAGCTATGGGTAAAGATGTTCAAAAACAGCTAGATAATGAAGAACTTAGTGACACTGCTACATTGAAAGACACAGATGACATTGAAGAGGACACGCTAGAAGAAGTCAGTGTTAGTGAAGGTGAACTCTTGGCGGAAGAATATCCAGTTGTTAAATtgttaaatcaaattaaaagtCCACCGAACGCACAGTCTACAACAGGAGGTGTTTATTATAATCAAGAGAAGAGCGAAGGAGAAGTTAGCTTTGGTcaacaaataaaagaaagaaataaagagcCAGCTTACCAACGCCTAAGTGTGAATGGGACAAGAGAGTTGAGGCGCAAAGATCTGTCCAGTGGTGAGCTGACGTCATTGAGCAATAATGGCGGGAAAATTCCGAGCTACTCGGTAGGAGAAGTACGAAACTTGTCCATAGGTGACTTGGGACAGAATTccaaagctgaatcaaattcgGTTGCTTTGCAAGATATGGACGATTCAGAAGTATTCAAGAAAGGACCTAGACCCGATATATCTGACTCCGAGGCTGGCGTTTCAAGCAAAGAGATTGCCATGTCTGAAATCAAATCTCCAGGAGGAAAACAAAGTAGCGAGGCAACAGCTTTGAATAGAATCGATCACGAGGCTGGCAAAGGAGCGCCTCCCGCCCGAGCGATATTGGTTCAATCTAGAGACTTCGATAACGCTTCGACTTTTAATTTCACGGATTCTTTGAACGAAACTAGATTGGGAACTTTAAATGATCTTGACTTGGGAACATTGAATGAGCAGCAGATTGATGAGGCAGTCGAAAGCCCCAAGGACGGGGAGACTCGTAATTGGAATCAATCCAAAGATGAAGAGAAAATACCAACAAAGATTACGTTAATGATTCCATCAGTTGCTGACGAAGACAGTGCAGATGAACTTACATTAGAAGGTGATGTTTACAGTTATGACGATGGGGAAGATGCAGCATCGATAAAGCTAGCCTTTTACGCGCGAAAAGAAGACGCGGCATCGATAAAGCTAGCTAACACGTTTGGAATCAGCGAAGAATTAACTCATCTAAGTGACCCGACGGTTTGGCGGCCAGATTATTGCCGCCCCGATACTGACTCTATGCTGTGTCTTAGAACTCGCCGGAGCAGCATGGAAGTTTTTGAAGAGCAGCAATTAACgaaaaatgaagctgaaagGAGGAAAAAAATTATGTCAAAATATGATACTATCAAAAATTCTGTACTCAAGAAACTTGGTAATCCCTGTGCAGCCAAAGTAGTTCAAAAACCATGTATGGGAGAGAAAGACAAGGAACAAgtaaaagaaaatatgaattcTACTGGAAAGAAACTTAAAGCAAATGAcaagatgaaaaagaaagaggagCTAGTGGTCCACAATGATCATAACTATTTTAGTCAAGTAAAGCGATGTGAGAAATGTAAGAAGCATTATGATATAAGCTACTTGCAGTCTCACATGGAAGTTTGCAATGGCAAGAAGCATGTAGAAATCATTTGTAGAAGTGCAACAGATACTGATGCTGGTAATGAAACGAGCACTGAATTGCCAGGTGAAAGTGAAGCAGTTGAAAGGAGTCAGAGAGAGGAATTTCCCTGTGAAGTCTGCGGGGGGAAATTTCCATCTACGGTGAATCTTCTAGTACATGAAAGAGTTCACAGAGGAGAGAGACTTTATGTATGTGATATTTGCAACAGAGGGTTTGTAACATCAAATGGCCTAATCACCCATAAGAAAACCCACACAGGCAAGAGATCATATGAGTGTTCTTgtggaaaagttttcagttcattttctgGTCTTGTATCACACAAACGGATTCATGCTAAGGAAAAAGGATACATATGTAACATATGTGGAAAAGTCCTTAGCCATAAATGTAGTCTGAAAAAACATCAACAACGTCACAAAGGAGAGAGAACACACAAATGTGACACATGTGGTAAAGCATTCTTTTTGTTTGGAGCTCTTAGAGATCACCAAAGAAAACACACAGAAGGAAGGCCATTTAAATGTGAAACCTGTGGACAAGCCTTCAAACGGTTAGGAAACCTTAAATACCACCAACAAACTCACAATGGAGATAGAAAAAAGAAATGTGAAATTTGTGGTAAACTTGTTATAAATCTTAAACGACATAAGTGTATCCATACAGTTGAGAAGGTGTTTTCTTGTGATATTTGTGGGAAAAGCTTTTGTTCAGACGATAACTTGAAAAAACATCAAGTAATTCATACTAGCAAGAGAACTTTTGAATGCAATATTTGTGGGGAAACGTTTCCTCTGTCAGCTTATCTCAAGCAGCATCAAAAAGCTCGTTGTAGAAAGAGGCCTTTTAAATGTAATGTCTGTGAGAAACAGTTTACTCTATCAATATATTTAAAACGACATCAAAGAATTCACTCCAACAAGAAGCCCTTGAAATGTAATATTTGTGGGCAACGGTTTGTTTCATCATCATATCACAAACGACATCAAAAGAATCATTCTGAAAAGAAACCCTTAAATTGTGATACATGTGGAAAACAGTTTAATTCATCAACAAATCTCAAAAGACATCAAATAAATCATACTGGAGTAAGACCCTTTAAATGCGATTTATGCGGAAAGGATTTTGCTTTATCAAGATACCTTAAACAACACCAGCAAACCCACTTAGAGGAAAAACCACACAAATGTGCTCTCTGTGAAAAAACATTTGGTACTGTTGCCAATTTGCAAAGACATAAAATATTGCATTCTGACGATAGACCATTTGGTTGTGATATTTGTGGGCAGCGATTCACTCAATCAGCATATCTCAAAAGACATCAGTCTATTGCACATGAAGTCAAGAGAGAACTTGCATGTGGTACATGTGGGAAAATATTTACATCGCATGATGGCCTAAGACAACATCGAGCTATTCATGCAGCAGAAAGACCATACAAATGTGATCTCTGTGGAAAAGGGTTTAATTTTGAGTCTGGTCTTTTCGTTCACAAAAAACATCATACCGGAGAGAAACCTTACAAATGTAATGTTTGTGACAAGGAATGTGTCACATCAAGTAGCCTAAAAATGCACCAAAGGACGCATTTAGAAGACAGACCCTTCAAATGTGAAATATGTGGGAAAGGATTTAATTACCTTTCTGGTCTAAAAACACACAAGCTAACTCACACAGGAGAGAGACCTTTTAAATGTAATGTCTGTGAAAAGGGATTTCGTACACCAGAATGTCTTAAAATACACCAAGGAACTCATTCAGACAGTGGGCCTTATAAATGTGATATTTGCGATAAAGAATTTCCTGTGGCCTTGTATCTCAAACGACATAAGGATCGTCATGCAGGAAAGGGATCCTGTACATGTGAAACATGTGGGAAAACATTTATAGGAGCTGCCTCTCTTGATAAGCATGAAAGGAAACATAAAATAGGAAAGCCATATAAATGTGATGTTTGTGGAAAAGGATTGAATCATCTCTCTGCTCTTGAAGAACATAAGCTAACACATTCAGCAGAAGAGAGACCTTTTAAATGTGACATATGTAAAAGAGGATTTTTAGCAGCCGAAAGTCTAAAGTTACACCAACAAACTCATTTAGATAAGAAGCCCTTTAAATGTGGTTTTTGCTATGCTGGATTACAAGAGCTTAAAGAACACCAACAAAGTCACACAAAGAACTGCAGTAACTAA

Transcript

evm.model.HiC_scaffold_348.9

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1G7G9	TALPID3 protein OS=Gallus gallus OX=9031 GN=TALPID3 PE=2 SV=2
Q9BVV6	Protein TALPID3 OS=Homo sapiens OX=9606 GN=KIAA0586 PE=1 SV=4
H6D7E6	Protein TALPID3 OS=Danio rerio OX=7955 GN=talpid3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002502 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF15324 all species →	TALPID3	Hedgehog signalling target	Family	Interproscan
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR029246 all species →	Family	Protein TALPID3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24390 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.