Gene detail

Detailed information of evm.model.HiC_scaffold_349.3 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_349:25727...33743
NR annotation: CAH3162982.1, unnamed protein product [Pocillopora meandrina]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_349.3

ATGGGAGTATTTTGCAGAACAACAGTTGCATTTAAATTTGTCAACGTCTCAATTCAAGGATTAGGACAATGCCAAGGAGCGCAAGAATACACAGTTGGCGGACATGTTGATGTGTTTAAAGGAATTCCTTTTGCAAAGCCTCCTCTTGGTTCTCTTCGCTTTAAGGCGCCGGAATATATTTCATGGAAAGGGTTTCTTAATGCAACAAAATTTGGACACCGTTGTCCTCAGAAGGATTCAAACAAAATTGTAGGCAATGAAGATTGCCTGACATTGAACATCTACAGACCAAGCAATTTTACAGGAAAACTCACTGTCATGGTTTGGATTcacggtggaggatatttatTAGGTGGGAGCTCATACTACGACGGGAGCCTTTTATCGGCAATGCATAATGTCGTTACTATTACAACCAATTACAGACTTGGTATTCTGGGATTTTTCAGCATGCCTGAAACAAATCTTAAAGGTAACTATGGAATGCTGGACCAAATTGCCGCCCTTCGCTGGGTCAAGAAAAATATCGCAAGTTTCGGAGGGGATCCAGACAAAGTGACAATTTTCGGAGAAAGTGCAGGGGCATCGAGTGTATCACTGCTTACTATCTCTCCTCTTATTTTTAATGAGGGTCTTTTTCATCGTGCTATTTCCCAAAGTGGCGTTGCCACTTGCGACTGGGCAGTCCAGCCAGTGAAAGATGATACGAAAGCTTTAGACTTTGGCAGATCAATTGGTTGTCCTGAAAAGCGGTCAATATCAAAGTGCTTGCAATACAAATCATATCAGGAAATATTGAGAAAACAAGCTTCTTACGACGGAACTCATTTAATGTCCCCTGTCGTTGATAATTACTTCTTGAAGAACCTTCCGTCAAAATTTCTTGCATCTGGTGGCGATTTGCAGTTTTCTGCTGCCGAAGTCTTGCTCGGATTTAACCATAATGAAGGCACAATTTTCGCAGGTGAtccaagaaaacaaaataaagaaacgcTGGAAGAAATCGTACGAGAAACCAACGATTTATTTGACCATTTCCCGGACAAGAAGCTATTTGAATCCATTGCAGTGTTTGAATATACTAAATATTCAGCAAGCAATTCATCCTTGCAATGGTTTGAAAGTAAAGCAGATTACCTGGGGGATTCTATGTTTGTTAAAGATATCATAAAATTTCCTGATTCAATCGCTCGCAATGGAAAAAAAGTTTATTTCTATGAGTTTACTTATCTACCACAAAGTTTGCGTAGCCCCTTTCTGAAAGTCGCACACAGTCTTGATAATGATTTTGTCTTTGGTACCCCTTTGTCAGAAGGCTTTTCAGCAATGCTTGGAAACGCTACGGAGCTTGATAAAAAAGTTAGTAGAAATTTCATGGAAATGTGGACCAATTTTGCCAAGCATGGAAATCCAGGACGACATTGGCCTGTCTATACCCTTGCTAACAAGAAATATCTTGATATTGGTGCAAATCTTTCTGTTAAGAACGCGcatatatatatatatatatatattcggGGTCATGCTTCTAGTGCTATGCAAGTTCTTGGCAGGTATCTGTCTAAAGCACCACATGTAGCTGCTTCACAAAGAAATAATGAACTGGCAAATGAAATAGAAAGAAGGTTTAAAGAATATGGCTTTGATGTTGAGAAGCCACAGTATAATGTATTGCTATCATATCCAAGGAAATCAAAACCAAATTACGCCTATATCCTTGATGATAAAAATAATGTGCAATTTAAAACCCAACTTATTGAAAAGGGTGCTTTACCAGGTGAAAATTCATCCGATGCTGTTCAACCATTCAATGCATTTTCACCTGCCGGAATCGTTACAAGCGACCTTGTTTATGTGAATTTCGGGACTGATGAAGATTTCAAAATATTGAAAGATCATTTTAAGGTGAATTGTACTGGGAAAATAGTCATAGCGAGATATGGCAAGATATTCAGAGGTTCAAAGGTCTTTAATGCAGAGAAAAATGGAGCAATTGGAATTCTAATTTATAATGATCCTATCAATTATGGACCTGGCCCTGAAAAATACCCAAAAAGTCTCTGGTTACCAGCAGATGGTGTCCAACGAGGTACAATAAACAACGCCGACGGCGACAGTCTCACTCCTGGTTGGCCTTCGACCGATGATGCTTACAGACTACCGTTGAATAAAGCTCCTGGAATGCCAAAAATTCCAACACATCCAATATCAGCAAATGATGCCTATCAATTTCTCAGCAAAATGGGCGGCCAGAATGTTGGCTTCAAGAACTGGACTGGTGGTTTGAACATAACTTATAGAGTTGGCCCTGGATTTGTTTCCTCTTCCTCAAATTGGAAAGTGAAGATAGAAGTGAATAATGAGCTCAAGACAATGAGAATAACAAATGTCATTGGAACAATTAAAGGATCGTTAGAACCAGACCGTTACGTTTTAATTGGCAACCATCGAGACTCGTGGGTGTTTGGTGGAGTTGACGCTTCGAGTGGTGGATCTGTGTTATTGGAGCTGGCAAGAGTCATGGGTGAAAAATGA

Transcript

evm.model.HiC_scaffold_349.3

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O77564	Glutamate carboxypeptidase 2 OS=Sus scrofa OX=9823 GN=FOLH1 PE=1 SV=1
P70627	Glutamate carboxypeptidase 2 OS=Rattus norvegicus OX=10116 GN=Folh1 PE=1 SV=1
Q04609	Glutamate carboxypeptidase 2 OS=Homo sapiens OX=9606 GN=FOLH1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02225 all species →	PA	PA domain	Family	Interproscan
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR019826 all species →	Active_site	Carboxylesterase type B, active site	Interproscan
IPR046450 all species →	Homologous_superfamily	PA domain superfamily	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan
IPR050309 all species →	Family	Type-B Carboxylesterase/Lipase	Interproscan
IPR019819 all species →	Conserved_site	Carboxylesterase type B, conserved site	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11559 all species →	CARBOXYLESTERASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.HiC_scaffold_349.3. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_349.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.