Gene detail

Detailed information of evm.model.HiC_scaffold_35.207 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_35:2040356...2056090
NR annotation: XP_002117516.1, expressed hypothetical protein [Trichoplax adhaerens]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3SBB5	Lipoyl synthase, mitochondrial OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_38449 PE=3 SV=1
Q16W22	Lipoyl synthase, mitochondrial OS=Aedes aegypti OX=7159 GN=AAEL009368 PE=3 SV=1
B0WAU6	Lipoyl synthase, mitochondrial OS=Culex quinquefasciatus OX=7176 GN=CPIJ004250 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR003698 all species →	Family	Lipoyl synthase	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949 all species →	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0009107 all species →	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992 all species →	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_35.207.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.