Gene detail

Detailed information of evm.model.HiC_scaffold_35.57 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_35:565616...838861
NR annotation: CAH3045967.1, unnamed protein product [Pocillopora meandrina]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_35.57

ATGGCGGAGCTTGCACACCAAATAAACAAACGACAAGAAAGACTGATATTCTTTCTACTTCTTGTTGCTGTTAGTTTTGATAACATACATGCCGACAAAGGTGCAGTTTCTTTGCAAGTTGTAGAATATTGGGCAGATCTCATTGGCAATGAGACATCTTCATTTGCAGAAGAAACCATGGAAACATCTTACATTAGAAAAGAATATGAAGCGCACAATATGAAAGTAGAGATAATTAATGGAACTGAACTTGCAGCAGAACTGGCTAACAAAGTTGAGCAGTTCTTCAGTTGGAAGATAAGAGCCCTCAGAATTCTCGctgaaaaagcagaaaaagcCGAAAAGGACTTTGTTGATTCAGAAAAGGAACTCAAATATTACGCAGCCAAACAATTAGAAGGCATTGAGCTTGGTTATGATGCTCATTTTGGAGTGCCAATCAACACAACAGCAAGTGTCGTACATATTCCTACTGAAGTATACGACCGAGCGCCGAAAGTTGCAAGGGATATAAAATGGACCAAAAGACTGAACAAAGTATTTAAAGATAATTTTGCAATGTTTCCTGATCTTTCATGGCAATACTTTGGGAGTGCTGAAGGCATTCATCGCCAATATCCAGCAAGGACATGGCCTGTCACTGTTGGGGTGCCAGATCTGTACGATGCTAGAAGAAGACCATGGTATATCCAAGGAGCAAGTTCCCCAAAAGATGTTGTTATCTTAATTGATCGGTCTGGAAGTTTGTTAGGTTTGAGAACTCAAATAGCCAAGTTAGCAGCAAGCGTCATTGTAGACACTCTTTCGACGAATGATTTCTTTCACGTCGTTCTTTTTAATAATGAAAGTAAACTTATCTGCTGTGAAGACTATGGCCTTAAACTTTTACAagcaacaagaagaaataaagaGtttgtcaaaaataaacTGAAACAATGGGAATCAACAAGTACAGCTAATTGGAAAGCTGGGCTGGAAATGGCGTTCAAAATCCTCCGCAGGGCTAAAGCAAGAAACGAGGGAACGCAATGTCAACAAGCTTTACTTATTTTGTCTGATGGATCTGCAAATTATGAGGAAGAAGTTTTTAATGAATATAATTCTGATAAAAATataCGAGTATTTACATTCGTGGTTGGACCACCGCAGTATCGTGTACAAGAATTAAAAGATATGGCTTGCAAGAATAAGGGGTATTTTTTGAGAATTCCTAGTGTTGGCACAGTATGGGAAACTGTCACATCGTATATCAAAGTGCTTAGCAGACCAGTTGGTGTTAATAAAGTCAAACCCACTTCTTTTACAAGTGTTTTTGTAGATGCTACGgGAGGAGGTTTAGTTTCTACAGGCTCCACTCCGGTTTTTAAAAACTCAAATACATCGGATTCTGAGCTTCTTGGTGTTATGGCTACAGATGTTCCTGTCAAGGATATGAATGAGTTCATCTATTATCCTTTGATGGGGCACAATGGTTACGTGTTTGCCGTGGATAACAATGGACTGATTCTAATTCATCCTGGAATAAATGAGGCGAAGcTTGGAAAACTCTCTCCACAGCCGAATATGGATCTTGATCAACTTGAATTTTCAACCAAAGATCAGATCCATGTTGATAAGctGCGTGAAAACATGATCCTACAAAAAAGAGGAATGAGAAAGTTTGAAGCATTTATAAAATCAAAAGATGATATGAGAGTTAAAAAACACACAATGGAGTATCACTATTTCAGAACCCAAAGCAGTCCGTTTAGCATTGGCTTGACATCATCAGAGTTCGGATACAGTATCATACAACCCATAATCGACTTTAAAAAAGGAAAGAAGTCTTTGGAAACTGTGCAACAAGTAAAAGGGTGGCCATACTGCTCCAAAGTATGGAATCACAAAAACTTAAAAGAAACTTTGCTGAAAATTCTAGAAAAGGCAATAAAAGAAAACGACAATAAGCCATCCATGTGTGATTTGAGAATGTTACGTGGTCTTCTTTTTGATTCAAATGTTACCCAAGATATATATTCTCTATGGAAATCGAAAGCGAAGAAGAGAAGGGAGGATGACGTGATCAACGTTTTTCTGAGAACACATTTTGGTGTGATACGCTCGGCTAATTCAAGTCTTCCATATGCAGAGGGTTACAGACCGAAGAACTTCAGTCAGAAGGTTGAATTGGATTATTATGAAAGAGCAGTCCAGCAACCAAATCAAGTCCTTACATTAACTGTATCTTCTAGTAAAAATAGAAAGGCAGTAGACAGAATATTGTCAATTTATGCCCCAGTGAGACTACGTCAACCGGCAATCACTGTCGCAGTTGCTGGTCTTGAAATGAATTATACAAGCTTTGCAAAGAAACATTTCATTCAACAAACCAAGAAATGTCCGGGAGGTGAACGATGTGACATGAGGCTAACATGTGATCGATTGCAAAAGAATAAAATCGAAGGTCTTTACTGTTACTTATTGGATGAGAATGGATTTGTAGTTGCATCAAATGAGAAAGAAGATATTGGAAATTTCTTCGGTCTAATCGATTCAAAAGTAATGGAGAAGCTGATTGTAAACAAAACTTTATCACGACCTGGCATATATCAATTGGTTTCGTTACCAGACTATCAGGCATCGTGTAAGTTAGTGCCGAGTCAAGGTAGCAGTGCAGACCGTCTATTTACAGTAAGTATTAATCAATCATGTTTAATTAAATTAATGATCAAATCCACCAACCTTATAAGAATATTCTCTTCTTTTGGTAGCAGCCCAGCTGTTTCTGCTAGTGATGAAAATGCAAAGTATATCAACTGTGTAAAAGATAATGTTATGTACCTCGCAGAGAAGGACGAAAAGCTATCATTTTTAGgaaatgcaacttgtggaagAGATGCCTGTGTAAGATCTTTTGCAGTATCGCGAATCAAGAAAACTAATCTGTTCTTATTAGCAGTAGAAAGCACATGTGGAAAGTGCAAATCCAGTATTCATGGAATCAATGATCTTCCTGGAATTCCTGGTGTTTCTAAAGAAAATatcctttttcatcaaaattcatGTGTCTGTATGATTTATTAA

Transcript

evm.model.HiC_scaffold_35.57

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CFG5	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Rattus norvegicus OX=10116 GN=Cacna2d3 PE=1 SV=1
Q8IZS8	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo sapiens OX=9606 GN=CACNA2D3 PE=1 SV=1
Q9Z1L5	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Mus musculus OX=10090 GN=Cacna2d3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000969 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF08473 all species →	VGCC_alpha2	Neuronal voltage-dependent calcium channel alpha 2acd	Family	Interproscan
PF08399 all species →	VWA_N	VWA N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR013680 all species →	Domain	Voltage-dependent calcium channel, alpha-2/delta subunit, conserved region	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR013608 all species →	Domain	VWA N-terminal	Interproscan
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04860	CACNA2D3; voltage-dependent calcium channel alpha-2/delta-3	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.