Gene detail

Detailed information of evm.model.HiC_scaffold_35.62 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_35:937944...965800
NR annotation: XP_027057728.1, cytoplasmic dynein 2 heavy chain 1-like [Pocillopora damicornis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_35.62

ATGCCTTCAGCTGACCCAAGGAAAGATTTTGTTCTCACGGCATCTGCAAACTTTTTTGGCATTGATAAGCAAAATATTGATGCAAACGATCACACCTGCCTCAATGCATTCTTAGATGATGGCAACTGTTCAGTACTTACTACATTTCTTATCGTATCAAATGGCAGTAAGAAGCTGGTTTTCTCAAATTTTCTAGAAAGCGAACCTTCACACAGCCTTTGTCTGGTATTTTACAAAGCATCACCAACAGCTGTAACAGCAGAAAACATTCAGTCAAATATCTATGTTTCTTCTTTATCTAAATCTCCAGTTACAACTTTGTACCATACATTGCATAATGTTTTTGTGCCAAGTATTTTGAAAGATAAGAATTCACAgcttgatgttgatgataaacTTGGAGGTTTGATCAAAGAGCTTGAAACTGGGCTTGGTCATTATCTGAGGAAGAATGGTGTCAAGCTATCTAAGATCAATGATGGTTCAGCTGATGAGAACAGTCTTGGGACAATCTTTTCCCCTGAGGATGAATTTCAGTTCTGGACTGATATCTCAAAGTCAAGTTCCTCTTCAAGAAAACGTGCAGCTTTTTTCCTTAATATTTTCAAAAGAGGTAATATGTGCAACAGTTTTAGCAAGCTCTCATCACTGGATTTTCCTGAGTTTTTTGAACTGATAGAAGTTGTCCAGGAAAACCTTGATGAGTTATGGAAgcaagatgatcatgatgcatACCCACAGGAACGAATGAGCCATTTCCTTGAGATCACATCATCTGCATTTGGAAGGGCATTACATAAGCTGCTGAAAAATAGTGATGTTTGGAAAGAAAGTTATGCAACTGTTAAGGAGAATGTGCAAAATTCAATACAAGTCTGTGAAAAGTGGGTGCAAGTATGCAGTGCTTTGACCATTCAGTTCTGGAGGAATTATCAACTTCACCCATGGAGAGGAGAAGGTTTCAAGCCTGAAAAATTAATTATGTTTAGGAAGAGGCTTGCTGAGGTATTATTGATCAGATCAACGCATGAGCAACTCAGTTCGTTGATGTCGAAAACAGAGAATCGAACCTTGCACCTTTCAGAAGcattctcttctttttctgctttgGATCCACTGCTATACAATCCATTCACTGAACCACAATGGCGGGAAGCTGTTGCTCAATTTGAAAAAGCTATCCAACCGACTGAAGACAAAGTATCGGGAAAATTGCGCCAAAGATTCAGAGAGCTTGATTTGTCCCCATTTAtgaaaaaccTTCTTGAGTTTTATTTAAACCGACTGTTTGTTATGATCTTAATTCGTTTGTTTTATTGGACAACAACTGCTGTAATTTTCGCAAAGTTAGAGACGTTACTTGGCCGACTTCTGGAATATATTAAAAGCATGAAAGAAGACTTCTTTGACAAATCTGGTCAGAACACAGTGGATGCTAAACAGCCACCAAAAGGACGAGATCTTCCTCCAATTGTTAACAACATAATATGGGCAAGGCAATTGCAAGGAAAGGTAAAATCGACATTGCTTGTAGCGGAGGAGCTGCTGAATGATCTAatgaattttagaaaatttcaagaaaacgcTTCAAATTTAAAAGAGGAAATCGACGCTTTTATAAAAGAACAATACGAAAGTTGGGTCAAGGAAATATCAGAAGCCATAGAAGATCCACAAAATCCACTATGCCTAAAGACTAGTGGCAATTTGATGGAACTTGGTAAAGAGGATGGCAAGCTGAATGTTCATTTCGATGAAAGACTCGTAACCCTTATCAGAGAAGTCCGTCAGTTAAATGGCATGGCATTTGTTATCCCAGCTAAAATACAACACACAGCCAATACTGGTCAAAAGTTCTACAAACATGCTGTTGTTCTGAAACAGGTTGCACATTTCTACAACACAATTGATCAACAAATGATACCTTCTCAGCAAGCAATGATGCTGGATGCGGCGCTGACATTTGAAAAAATGGTTAAGAACCCAAAACATGGAGCATCAGAAGGAAAGGGAAAAGTCAATGTTACATGGGACAATCCTTCAGAAGTAGAAAAATATATCAAAAGATTACAAGCGGCTGCAAATAAATTGTCAACAGATAATCGAAGATTGAGGAAGAAGCACATCACAATGGGAGAAAATATTGTACAGCTTATGTGCATAGATCTCATTCGAAGTCCCACAATGTGGAAGGAAGTACTATTTGAAATTAGGCAGTCAATTAATGGTTTGGTTCAGCAGGGATTCAAAGAAGAGAACATGAAACCTTGGAAACAGCACCTTGACGTTCAAATTTATAAGGCTCTGGAACATCAGTATCAACTTGGATTAGAAACTTTCACTGAGAATCTACCTGAAATCAAAGTCGAACTAGTTTTTAGACAGAAACATCTTCAGTTCCGACCACCTTTTGaagaaatcaaagcaaagtATTACAGAGAGATAAGGAGATTCCTTTCAATACCAGCAAATTTTAAAGGAGTTACAAATGAGAACACAATTTTCGCTGCGATTGTGGAAAAGAATTCAGCTGCATTTTACGATTTGTACTTAAAAGGAGAAGAACTCTTTGAGCGTTTAGATGCTGCCAAATCACAATTCAcagattgggttgcaattggagCAGTTGATGTAGAAAGCCTTGCTGAGACACATCTGACTAATTTAACTGAATGggaaaagaatttcaaaatgatGAAAGTAAAAGGAAGGGAAGCTGAGAAGTTGCCTTCGTCCTTCAAAATGGGATGCATTGTTTTATCGACTAGTGCAGTGAAGACCTCCATAGATGATTTGATTCAGAAATTATATGATGCCTTAGTCATTACTTTGCGACGATCTATTGTAAATGACTTTGCAAAAGTTGACTCATACTTAACCAAAGGCATGGAAACACTGGGCTCTGTGCCTCAGACCATAGAAGAAATAACTGAGGCCAGTAAACAATATGCGTTGCTCTCAGCGGATAAAAAAGAGATGCATTTGGTGTTTGATTCAGCATTGGCTAAGAATAAACTGTTAACTACCGTGACTGTTGAGGGAGTTGGTCAACTTGCAACTTTATCTCAAAAGTGGCATAAGCTAGAAGTAATGATGGAGAGTCACGAGCTGATGATTAAAGGGCAGGTTGATGTTATGAAAAAAGATCTGGAGAATCGATTGAATGCCTTTGATTTGGAAGCCCAAACCTTTGCTGCTCGTTGGAAGCAGCTTAGGCCTTCTGACATTGATGCAAATAGTTCTGCAGAGAAATACAAAGAAGCTGCTGAAGGTatcaaagaaagaaggaaagaacTGGATGAAGTTATCAAAAACAGAGACAAATTGCTAGAGGACTGTGCAAATTTCGCTATTGAAAAAGACAATCTCACGGATCTGGAAGAGGTCAAATTAGACATTGAGCATTATGAAGAAATGTGGAAAATCTTTGAAGAGTTCAACGATGAAATTTCTCAACTTTCTAAAGAGCATTGGATATCAATAAGAACTCGGACTcatgtttttgatgatttgttGGTGTCTTGGATAGAGAAGCTTAGGAAAATAAAACCAAATATGATGACGCTGAAGATTCAGCAAGATGTTGACAAATACAAGAGCATTGTTCCAGTTCTCAAGTATGTCAGAGGGGAATCATTGTCTAGTGATCACTGGCAAGAACTATTCAGACTTTTAAAAATGCCTAAAGGGACAACACTTGAGAAACTATCTTTTGGTGATGTGCTTAACGTTGCAGACGAAATAATTGCTAAACGTGATGAACTGAAGGAATTGAACAGCAGAGCTCAAGGGGAAGTATCAATTCGCGATGCTTTACGCGAACTTGAATTATGGGGAGCTGGTGCTGTATTTACTTTGACATCGTATTCTGATTCACAAAGTGTGGAAGTTAAAATCATAAAGGACTGGAGAGATCTTTTCAATCAGGTTGGAGACAATCAATGTCTTTTGCAGTCACTGAAAGATTCGCCGTATTTCAAAGGATTTGCTGACAAAGCTTTAATATGGGAAAACCGTTTAGCAGATTTGGATGAGTTTTTGCATTATCTAAATCAGATTCAACGCAAATGGATCTATTTAGAACCTATTTTTGGAAGAGGTGCTTTACCAAGAGAACAAGATAGATTCAGGAAACTTGATGAAGACTTCAGATCAATCCTTTCAACTGTATCAAGGGACAACAGGTTGATTGCACTTGTCAACTACTCGGGCATACGAAATTTGCTAACTACCATTCTTGATCAACTGCAGCGATGCCAGAAATCTTTAAATGAATTTCTTGAGGAAAAGAGATCACTATTCCCGAGATTTTATTTCATCGGAGATGATGACTTACTAGAGATTCTTGGTCAATCTACAAATCCAGTGGTGATTCAATCACACTTGAAAAAGCTTTTTGCCGGAATTCacaatgttgttttcaatgaATCAAATACAAAGATAATTGCAATGAAGTCATTAGAAGGAGAAACTGTCAATTTGGTTGATCCAGTACATATTACAAACGAAGTTGAGATTTGGCTAGGAAGCCTGGCATCCGAAATGAAAAATACTTTGAGTAGTTCTTTGAAAGAATGCCTCAGAGCAAGCAGAGCAGGCAACGTAGACCCGTCGTCATTTTCCTCTCAGATAATTTGCTTAACAGAACAAATAACGTTCACTGAGAAATGTGAAGAAGCTATAAGCAGAGGCAAACTGGCGGCATTTCGAAATGACCTCAGACAGCAATTAGAATCTTATACTGGTGCTGATATTCAAATCACAGATGAAGAGTCTCGTGTTTTGAATTTAAAACTCAAAGCATTGATTCTTGATGTCATCCATTTCATCGATGTTGTTGATCAACTTGAGAATGCTAACACAACTAATACTTCTCAATGGCCTTGGCAGAAACAGTTGCGATTCTACTTGACAAAAAGAGGAGATTGTGTCATGAGAATGGTAGATGCTGAGTTTGCATATACATACGAATATCAAGGAAATGCACCAAAACTAGTTCATACCCCTCTAACAGATAAGTGTTACTTAACGCTTACACAAGGCATGCAGATGGGTTTTGGTGGTAATCCTTATGGCCCTGCTGGAACAGGAAAGACAGAATCTGTCAAAGCTCTTGGTGGTCTATTTGGGCGACAAGTCTTGGTTTTTAATTGTGATGAGGGAATTGATGTAAAGTCCATGAGCCGTATCTTCATTGGATTGGTGAAGTGTGGTGCCTGGGGATGTTTTGATGAATTTAACAGATTGGAAGAGGCTGTGTTGTCAGCAGTTTCAATGCAAATTCAAAGTATTCAAGCTGCCATCAAGAGTCAATCGAAAAACATAGAGCTGCTTGGAAAAACGGTTGATTTGGATTCGAATTCTGGAATCTTCATAACATTAAATCCAGCTGGTAAAGGGTATGGTGGAAGGCAGAAACTTCCAGATAATTTGAAACAGCTGTTTAGACCAGTGGTAATGGCTCAACCAAATAATGAACTCATCTCTGAAGTGTTACTTTTTTCAGAAGGATTCAAAGAAGGCAAAAAGATCGGCAAGAAGCTTAATGCTGTTTTTACTTTGTCAAGAGAACTTCTATCTAAGCAACAGCATTATGATTGGGGTCTAAGAGCACTCAAGACTGTTTTGCGAGGTTGTGGTAGTCTACTGCAGAAGGAGAGAAAGAATGGATTGAAGGCTTCCCCGCATACTGAAGCGATGATAGCTGTTCAAGCTCTGCGTCTGAATACATTGTCAAAGCTTACATTTGCCGATTCAAACAAGTTTGACGACCTGGTTAAAGATATCTTTACAGAAGTTGAATtcaaagaagttgaatatgctgAGCTCAGAGCTGCTTTGATCGAATCATTTGAAGAAAATGATCTGATTTTTAGTGAAATTCAGATGAAGAAATGTATGGAGCTTTATGAACAAATACGCCAGCGTATGGGAGTTGTGATTGTCGGTCCTTCAGGCTCGGGCAAATCGACCATTTGGAGAATTCTGAAGTCTGCTTTgaacaaaatgaaacaagaagTTAAACAGTTCACTATGAATCCTAAAGCTATGCCAAGGACACAGCTTCTAGGTCACATTGATATGGATACTCGTGAATGGTCAGATGGTGTTCTTACAAAAGCAGCAAGACAAGTTGTACGTGAACCATTGGAGATATGTTCATGGATTGTATGTGATGGCGATATTGATCCTGAATGGATTGAATCATTAAACTCAGTACTGGATGATAACAGATTGCTAACCATGCCATCAGGTGAAAGAATCCAGTTTGGACCAAACgtgaattttctttttgaaaCACACGATCTAAGCTGTGCTTCACCAGCCACCATTTCGAGAATGGGCATGATATTTCTGAGCGATGAAGACACTGATATTCGAGCTGTTGTGGGCTCATGGCTAAAGAAATACGCTGCCGAAAACAAAATGCTAGCCACTTGGATAGATGATTTCTTTTTCAAGGCTGTTAATATGGTTGTGAAACTGAATGATAATGTTGTTCCAACAACATTGGTTGGTATTGTGTTAGGTGGATTGTCTCACATGAAAGATGTATCAAATAAGTCAGAGTTTGCTTGCTCTTTGATACGAGGACTTGGAAGTAATTTACAGGAAAGCTCTAAAGAGGCTTTTGCGAACGAGGTGCGCACTTTTTACTTCATTTTAAGTCTATCATACAAATTTTGCACTAtataa

Transcript

evm.model.HiC_scaffold_35.62

Protein

evm.model.HiC_scaffold_35.62

MPSADPRKDFVLTASANFFGIDKQNIDANDHTCLNAFLDDGNCSVLTTFLIVSNGSKKLVFSNFLESEPSHSLCLVFYKASPTAVTAENIQSNIYVSSLSKSPVTTLYHTLHNVFVPSILKDKNSQLDVDDKLGGLIKELETGLGHYLRKNGVKLSKINDGSADENSLGTIFSPEDEFQFWTDISKSSSSSRKRAAFFLNIFKRGNMCNSFSKLSSLDFPEFFELIEVVQENLDELWKQDDHDAYPQERMSHFLEITSSAFGRALHKLLKNSDVWKESYATVKENVQNSIQVCEKWVQVCSALTIQFWRNYQLHPWRGEGFKPEKLIMFRKRLAEVLLIRSTHEQLSSLMSKTENRTLHLSEAFSSFSALDPLLYNPFTEPQWREAVAQFEKAIQPTEDKVSGKLRQRFRELDLSPFMKNLLEFYLNRLFVMILIRLFYWTTTAVIFAKLETLLGRLLEYIKSMKEDFFDKSGQNTVDAKQPPKGRDLPPIVNNIIWARQLQGKVKSTLLVAEELLNDLMNFRKFQENASNLKEEIDAFIKEQYESWVKEISEAIEDPQNPLCLKTSGNLMELGKEDGKLNVHFDERLVTLIREVRQLNGMAFVIPAKIQHTANTGQKFYKHAVVLKQVAHFYNTIDQQMIPSQQAMMLDAALTFEKMVKNPKHGASEGKGKVNVTWDNPSEVEKYIKRLQAAANKLSTDNRRLRKKHITMGENIVQLMCIDLIRSPTMWKEVLFEIRQSINGLVQQGFKEENMKPWKQHLDVQIYKALEHQYQLGLETFTENLPEIKVELVFRQKHLQFRPPFEEIKAKYYREIRRFLSIPANFKGVTNENTIFAAIVEKNSAAFYDLYLKGEELFERLDAAKSQFTDWVAIGAVDVESLAETHLTNLTEWEKNFKMMKVKGREAEKLPSSFKMGCIVLSTSAVKTSIDDLIQKLYDALVITLRRSIVNDFAKVDSYLTKGMETLGSVPQTIEEITEASKQYALLSADKKEMHLVFDSALAKNKLLTTVTVEGVGQLATLSQKWHKLEVMMESHELMIKGQVDVMKKDLENRLNAFDLEAQTFAARWKQLRPSDIDANSSAEKYKEAAEGIKERRKELDEVIKNRDKLLEDCANFAIEKDNLTDLEEVKLDIEHYEEMWKIFEEFNDEISQLSKEHWISIRTRTHVFDDLLVSWIEKLRKIKPNMMTLKIQQDVDKYKSIVPVLKYVRGESLSSDHWQELFRLLKMPKGTTLEKLSFGDVLNVADEIIAKRDELKELNSRAQGEVSIRDALRELELWGAGAVFTLTSYSDSQSVEVKIIKDWRDLFNQVGDNQCLLQSLKDSPYFKGFADKALIWENRLADLDEFLHYLNQIQRKWIYLEPIFGRGALPREQDRFRKLDEDFRSILSTVSRDNRLIALVNYSGIRNLLTTILDQLQRCQKSLNEFLEEKRSLFPRFYFIGDDDLLEILGQSTNPVVIQSHLKKLFAGIHNVVFNESNTKIIAMKSLEGETVNLVDPVHITNEVEIWLGSLASEMKNTLSSSLKECLRASRAGNVDPSSFSSQIICLTEQITFTEKCEEAISRGKLAAFRNDLRQQLESYTGADIQITDEESRVLNLKLKALILDVIHFIDVVDQLENANTTNTSQWPWQKQLRFYLTKRGDCVMRMVDAEFAYTYEYQGNAPKLVHTPLTDKCYLTLTQGMQMGFGGNPYGPAGTGKTESVKALGGLFGRQVLVFNCDEGIDVKSMSRIFIGLVKCGAWGCFDEFNRLEEAVLSAVSMQIQSIQAAIKSQSKNIELLGKTVDLDSNSGIFITLNPAGKGYGGRQKLPDNLKQLFRPVVMAQPNNELISEVLLFSEGFKEGKKIGKKLNAVFTLSRELLSKQQHYDWGLRALKTVLRGCGSLLQKERKNGLKASPHTEAMIAVQALRLNTLSKLTFADSNKFDDLVKDIFTEVEFKEVEYAELRAALIESFEENDLIFSEIQMKKCMELYEQIRQRMGVVIVGPSGSGKSTIWRILKSALNKMKQEVKQFTMNPKAMPRTQLLGHIDMDTREWSDGVLTKAARQVVREPLEICSWIVCDGDIDPEWIESLNSVLDDNRLLTMPSGERIQFGPNVNFLFETHDLSCASPATISRMGMIFLSDEDTDIRAVVGSWLKKYAAENKMLATWIDDFFFKAVNMVVKLNDNVVPTTLVGIVLGGLSHMKDVSNKSEFACSLIRGLGSNLQESSKEAFANEVRTFYFILSLSYKFCTI

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27802	Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla OX=7673 GN=DYH1B PE=2 SV=2
Q9JJ79	Cytoplasmic dynein 2 heavy chain 1 OS=Rattus norvegicus OX=10116 GN=Dync2h1 PE=1 SV=1
Q8NCM8	Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens OX=9606 GN=DYNC2H1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002128 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21264 all species →	DYNC2H1_AAA_dom	Cytoplasmic dynein 2 heavy chain 1, AAA+ ATPase domain	Domain	Interproscan
PF08393 all species →	DHC_N2	Dynein heavy chain, N-terminal region 2	Family	Interproscan
PF12774 all species →	AAA_6	Hydrolytic ATP binding site of dynein motor region	Domain	Interproscan
PF08385 all species →	DHC_N1	Dynein heavy chain, N-terminal region 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049400 all species →	Domain	Cytoplasmic dynein 2 heavy chain 1, AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043157 all species →	Homologous_superfamily	Dynein heavy chain, AAA1 domain, small subdomain	Interproscan
IPR013602 all species →	Domain	Dynein heavy chain, linker	Interproscan
IPR042222 all species →	Homologous_superfamily	Dynein heavy chain, domain 2, N-terminal	Interproscan
IPR042228 all species →	Homologous_superfamily	Dynein heavy chain, linker, subdomain 3	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR035699 all species →	Domain	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Interproscan
IPR013594 all species →	Domain	Dynein heavy chain, tail	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10676 all species →	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729 all species →	Cellular Component	9+2 motile cilium	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_35.62.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.