Genomic Location: HiC_scaffold_351:64994...78894
NR annotation: CAF0754777.1, unnamed protein product [Brachionus calyciflorus]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_351.7 |
| Transcript |
| evm.model.HiC_scaffold_351.7 |
| Protein |
| evm.model.HiC_scaffold_351.7 |
| UniProt accession | Description |
|---|---|
| Q05733 | Histidine decarboxylase OS=Drosophila melanogaster OX=7227 GN=Hdc PE=1 SV=2 |
| O96571 | Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila lebanonensis OX=7225 GN=Ddc PE=3 SV=1 |
| P48861 | Aromatic-L-amino-acid decarboxylase OS=Manduca sexta OX=7130 GN=Ddc PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004923 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00282 all species → | Pyridoxal_deC | Pyridoxal-dependent decarboxylase conserved domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002129 all species → | Family | Pyridoxal phosphate-dependent decarboxylase | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR010977 all species → | Family | Aromatic-L-amino-acid decarboxylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11999 all species → | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016830 all species → | Molecular Function | carbon-carbon lyase activity | Interproscan |
| GO:0019752 all species → | Biological Process | carboxylic acid metabolic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016831 all species → | Molecular Function | carboxy-lyase activity | Interproscan |
| GO:0006520 all species → | Biological Process | amino acid metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18656 | DDX25, GRTH; ATP-dependent RNA helicase DDX25 | EC:5.6.2.7 | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |