Gene detail

Detailed information of evm.model.HiC_scaffold_366.27 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_366:216454...274202
NR annotation: CAH3022937.1, unnamed protein product, partial [Porites evermanni]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_366.27

ATGAGTTGGGTCTCTTTCTTCGGAAAGCAGTCAGATGTTTCAACGGAGAACTCTGCCATACCTGGAGTTACCCCGCTTCAACAGCAAAGAATTAAACAAATCGAGAGCCTCTCAAAGTTCAACAAGAATGTCAGTGAAGATGAAAGAGACAAGGAGTACAGAGTGAAATTCAATACAGCTGGAGGGAGGACGCATTTCATAAAAATATCTCTGCCTGAAAGATTTCCGAATGTAAAACCAATCATTAAATTGACTCCAAATGCCAATCATCCATGGCTTGATGAACAGATGAATGTTGTTGGATGCGATACACTGAACAACTTCTACATGCATTCAAATTTGGGAAAGGTAGTGAAGTTGATCATTGAAGAGTTCCAAGAAAACCTGCAACATCAGATGATGGCGCTCTCTGATCAGTACAATGATGTAGGGCAAGGAAATTTACGAGTTTACAACCAAGAACAGGGAACGAGATTCCAGCATCCTCTGCAATCAAAGAATACTGCGAAAACTGCCATGCTTATTTCCACTGACTCGGCAGATGATGAAACAGACAACGCTGTCAGAAAGGATCCTTCAGAATGCAAAGCTTTGGAGGAGCTATTAACCGTTTTACATGCAATGCCAATGGCTGACATTGAGAAGTTTTCCGAGaatgatgaaaaattgtttcagCATATCACGAATTTCGATATGGTCTTAGATTTCAAGAAGAAGCGAGCGTCCATGGTTGAAAGTAACGAGAATCTTGCAGaacaaaatttagCTTATAAACCAAGAATTGAAGAAGTCCAGAAGAAGCTAGAAGATAATTACGTTACATTAGAAAGGTTACAATCGGAATTCGAATCGAAACTTTCTAAGCAAGACGAAGTATTTCAGGTTTTTGATGTTGCTCAAATCATTACAAATTTTAGAATAGCAATTTCACAAGCAGATGAGCAAACAGAGGGGATTGCTGAAAGGTTTCTTGAAAaaaagATTCCCTTAGAAGAATTCTTGCCGGAGTTTCTTGAACAGCGGAAGCTAAGTaaggtcagggttcaagcccaaaCAATGGtagggtcacagccagggttgaacTCTTGTTTGGAATTAAAAAACAAAGTGACTGGAATTGATCTTATGGTACCAGATCATGAAGAATCGCAAGGAAAAGTATCAAAATCAGCACTATATCATGTCATTGTCATCACAAGATTGTTCTATTATAAATCCCCAAAACACAAGGAATCAGATGTTGTCCAGTTCATGATTACGAAAAAGTACGAAGAATTTGAAGATCTTTATCAAAAGCTGAATTCGAGATTTCCGAGTgtgatttttccaaatttaccACGAAAACCGCTGATTGTGAACTCAAGTACGTTTCAAGAACGTAGGAAAGTTATGGATGAAGTAATGCATTTGGTTGCAAGAACACAAAAGCTTTGTTGCAGTCCGATGATTCTTGAATTCCTTGGTGTAAGAAAACCCAAGAACCCAACAGTCGAAACAATTACTGTGAGtgaagatatttttgaagagaaaactGCAGATGAGGTTGAGCCAGAATTCGAAGCAACAGAGTCAACGGATATCAAGAGCGAATCAAACGAGAAAGAAGGAGGAGATTTATTTGTACCAGTTGATCTTGATTCATCAGCTAATTTAGAAGCTGATCAAGAAGATGCTTTTACTGCATCAAAATCAAGAAAGCTTGAGTTGCATGCTTCTCTGTTTGAAGATGAGGAAGAAAAACCAGAACAGAAAGACGAGTCGGATCTTTTTACGCCTGCTGATGTGAGATCTGAATCAGcacagaacattgatttggatCAAAATGAAGACACTGATGAATTACTCAAtgtagatgaagatgttgatgactTGTTGGCGCTAAGTAAGAAATCCGAACGCAAAGCGTCAATAAAAGCGTCCTCAAAACCTTATGTTCGACCAAAACCGCCGTCAAGAACTTCATTTGAATCAGTTCccgacaatgatgatgacctCTCGTTATTAGCATCTGCCAAACCTGAGGCAGCAAGCAAACCAAAAGAAGATGCTGATTTATTTAAAGAAGCCAGGAAAATGTCCCTGAGGGACAAAAGAGATCAACTAAGCAAGACTGATACGCTGGATGACATTTTTGAAAAGAACTCAGGtaacaaaaatctattttcgAAGCATACGAACGATGATGATCTTTTCACAACTACAAATCCTCCTAAGTCAGATGCAGCAGGCAATCTAGATGAAGATGACATAATGAAATACATTAATGATAACATGAACCAGGATGTGGCCGATTTACAGCTGTGA

Transcript

evm.model.HiC_scaffold_366.27

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3TC93	HCLS1-binding protein 3 OS=Mus musculus OX=10090 GN=Hs1bp3 PE=1 SV=2
Q53T59	HCLS1-binding protein 3 OS=Homo sapiens OX=9606 GN=HS1BP3 PE=1 SV=1
Q8NEZ2	Vacuolar protein sorting-associated protein 37A OS=Homo sapiens OX=9606 GN=VPS37A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006805 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF07200 all species →	Mod_r	Modifier of rudimentary (Mod(r)) protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR039701 all species →	Family	HCLS1-binding protein 3	Interproscan
IPR009851 all species →	Domain	Modifier of rudimentary, Modr	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14431 all species →	HCLS1-BINDING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_366.27.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.