Genomic Location: HiC_scaffold_368:817213...824422
NR annotation: CAB3982751.1, Transposon Tf2-9 poly [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_368.73 |
| Transcript |
| evm.model.HiC_scaffold_368.73 |
| Protein |
| evm.model.HiC_scaffold_368.73 |
| UniProt accession | Description |
|---|---|
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000003 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17919 all species → | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF00665 all species → | rve | Integrase core domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF07727 all species → | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF13976 all species → | gag_pre-integrs | GAG-pre-integrase domain | Domain | Interproscan |
| PF13961 all species → | DUF4219 | Domain of unknown function (DUF4219) | Domain | Interproscan |
| PF17921 all species → | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR036875 all species → | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR041577 all species → | Domain | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR021109 all species → | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR001584 all species → | Domain | Integrase, catalytic core | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR001969 all species → | Active_site | Aspartic peptidase, active site | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR013103 all species → | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR025724 all species → | Domain | GAG-pre-integrase domain | Interproscan |
| IPR025314 all species → | Domain | Domain of unknown function DUF4219 | Interproscan |
| IPR041588 all species → | Domain | Integrase zinc-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| GO:0004190 all species → | Molecular Function | aspartic-type endopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
evm.model.HiC_scaffold_368.73.
