Genomic Location: chr3:7821962...7908143
NR annotation: CAH3159890.1, unnamed protein product [Porites evermanni]
Species Aurelia coerulea · all data for this species · gene families
| CDS |
| evm.model.ptg000006l.387 |
| Transcript |
| evm.model.ptg000006l.387 |
| Protein |
| evm.model.ptg000006l.387 |
| UniProt accession | Description |
|---|---|
| P11029 | Acetyl-CoA carboxylase OS=Gallus gallus OX=9031 GN=ACAC PE=1 SV=1 |
| Q5SWU9 | Acetyl-CoA carboxylase 1 OS=Mus musculus OX=10090 GN=Acaca PE=1 SV=1 |
| P11497 | Acetyl-CoA carboxylase 1 OS=Rattus norvegicus OX=10116 GN=Acaca PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002191 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21385 all species → | ACCA_BT | Acetyl-CoA carboxylase, BT domain | Domain | Interproscan |
| PF02785 all species → | Biotin_carb_C | Biotin carboxylase C-terminal domain | Domain | Interproscan |
| PF00364 all species → | Biotin_lipoyl | Biotin-requiring enzyme | Domain | Interproscan |
| PF01039 all species → | Carboxyl_trans | Carboxyl transferase domain | Family | Interproscan |
| PF00289 all species → | Biotin_carb_N | Biotin carboxylase, N-terminal domain | Domain | Interproscan |
| PF02786 all species → | CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain | Domain | Interproscan |
| PF08326 all species → | ACC_central | Acetyl-CoA carboxylase, central region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049074 all species → | Domain | Acetyl-CoA carboxylase, BT domain | Interproscan |
| IPR005479 all species → | Domain | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain | Interproscan |
| IPR011763 all species → | Domain | Acetyl-coenzyme A carboxyltransferase, C-terminal | Interproscan |
| IPR005482 all species → | Domain | Biotin carboxylase, C-terminal | Interproscan |
| IPR000089 all species → | Domain | Biotin/lipoyl attachment | Interproscan |
| IPR034733 all species → | Domain | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta | Interproscan |
| IPR016185 all species → | Homologous_superfamily | Pre-ATP-grasp domain superfamily | Interproscan |
| IPR005481 all species → | Domain | Biotin carboxylase-like, N-terminal domain | Interproscan |
| IPR001882 all species → | Binding_site | Biotin-binding site | Interproscan |
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR049076 all species → | Family | Acetyl-CoA carboxylase | Interproscan |
| IPR029045 all species → | Homologous_superfamily | ClpP/crotonase-like domain superfamily | Interproscan |
| IPR013537 all species → | Domain | Acetyl-CoA carboxylase, central domain | Interproscan |
| IPR011054 all species → | Homologous_superfamily | Rudiment single hybrid motif | Interproscan |
| IPR011762 all species → | Domain | Acetyl-coenzyme A carboxyltransferase, N-terminal | Interproscan |
| IPR011764 all species → | Domain | Biotin carboxylation domain | Interproscan |
| IPR011053 all species → | Homologous_superfamily | Single hybrid motif | Interproscan |
| IPR013815 all species → | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45728 all species → | ACETYL-COA CARBOXYLASE, ISOFORM A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016874 all species → | Molecular Function | ligase activity | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0003989 all species → | Molecular Function | acetyl-CoA carboxylase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11262 | ACACA; acetyl-CoA carboxylase / biotin carboxylase 1 | EC:6.4.1.2 EC:6.3.4.14 EC:2.1.3.15 | Alcoholic liver disease | ko04936 | deepkoala |
Transcript abundance of evm.model.ptg000006l.387 across 30 RNA-seq samples of Aurelia coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
Every sample in this dataset carries its own condition — the source metadata gives each run a distinct treatment label — so this table is effectively a sample list. The per-sample chart below is the informative view here.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · T_A1ES | 1 | 1 | 1.58 | 1.58 | |
| whole organism · T_C3E | 1 | 1 | 4.65 | 4.65 | |
| whole organism · T_C2P | 1 | 1 | 1.13 | 1.13 | |
| whole organism · T_A2ES | 1 | 1 | 2.34 | 2.34 | |
| whole organism · T_A3ES | 1 | 1 | 2.30 | 2.30 | |
| whole organism · T_C1AS | 1 | 1 | 1.52 | 1.52 | |
| whole organism · T_C2AS | 1 | 1 | 1.79 | 1.79 | |
| whole organism · T_C3AS | 1 | 1 | 1.15 | 1.15 | |
| whole organism · T_A1AS | 1 | 1 | 7.22 | 7.22 | |
| whole organism · T_A2AS | 1 | 1 | 4.64 | 4.64 | |
| whole organism · T_A3AS | 1 | 1 | 4.78 | 4.78 | |
| whole organism · T_C1E | 1 | 1 | 4.11 | 4.11 | |
| whole organism · T_C2E | 1 | 1 | 5.61 | 5.61 | |
| whole organism · T_C3P | 1 | 1 | 1.12 | 1.12 | |
| whole organism · T_AE1 | 1 | 1 | 7.76 | 7.76 | |
| whole organism · T_C3ES | 1 | 1 | 1.01 | 1.01 | |
| whole organism · T_AE2 | 1 | 1 | 7.94 | 7.94 | |
| whole organism · T_AE3 | 1 | 1 | 8.19 | 8.19 | |
| whole organism · T_AES1 | 1 | 1 | 6.92 | 6.92 | |
| whole organism · T_AES2 | 1 | 1 | 7.82 | 7.82 | |
| whole organism · T_AES3 | 1 | 1 | 4.33 | 4.33 | |
| whole organism · T_AAS1 | 1 | 1 | 4.70 | 4.70 | |
| whole organism · T_AAS2 | 1 | 1 | 3.50 | 3.50 | |
| whole organism · T_AAS3 | 1 | 1 | 3.46 | 3.46 | |
| whole organism · T_A1P | 1 | 1 | 0.74 | 0.74 | |
| whole organism · T_A2P | 1 | 1 | 0.53 | 0.53 | |
| whole organism · T_A3P | 1 | 1 | 0.88 | 0.88 | |
| whole organism · T_C1ES | 1 | 1 | 1.33 | 1.33 | |
| whole organism · T_C2ES | 1 | 1 | 1.13 | 1.13 | |
| whole organism · T_C1P | 1 | 1 | 0.66 | 0.66 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR25982246 | whole organism · T_A1ES | whole organism | not recorded | T_A1ES | SRP459341 | 1.58 |
| SRR25982262 | whole organism · T_C3E | whole organism | not recorded | T_C3E | SRP459341 | 4.65 |
| SRR25982274 | whole organism · T_C2P | whole organism | not recorded | T_C2P | SRP459341 | 1.13 |
| SRR25982273 | whole organism · T_A2ES | whole organism | not recorded | T_A2ES | SRP459341 | 2.34 |
| SRR25982272 | whole organism · T_A3ES | whole organism | not recorded | T_A3ES | SRP459341 | 2.30 |
| SRR25982271 | whole organism · T_C1AS | whole organism | not recorded | T_C1AS | SRP459341 | 1.52 |
| SRR25982270 | whole organism · T_C2AS | whole organism | not recorded | T_C2AS | SRP459341 | 1.79 |
| SRR25982269 | whole organism · T_C3AS | whole organism | not recorded | T_C3AS | SRP459341 | 1.15 |
| SRR25982268 | whole organism · T_A1AS | whole organism | not recorded | T_A1AS | SRP459341 | 7.22 |
| SRR25982267 | whole organism · T_A2AS | whole organism | not recorded | T_A2AS | SRP459341 | 4.64 |
| SRR25982266 | whole organism · T_A3AS | whole organism | not recorded | T_A3AS | SRP459341 | 4.78 |
| SRR25982265 | whole organism · T_C1E | whole organism | not recorded | T_C1E | SRP459341 | 4.11 |
| SRR25982264 | whole organism · T_C2E | whole organism | not recorded | T_C2E | SRP459341 | 5.61 |
| SRR25982263 | whole organism · T_C3P | whole organism | not recorded | T_C3P | SRP459341 | 1.12 |
| SRR25982261 | whole organism · T_AE1 | whole organism | not recorded | T_AE1 | SRP459341 | 7.76 |
| SRR25982247 | whole organism · T_C3ES | whole organism | not recorded | T_C3ES | SRP459341 | 1.01 |
| SRR25982260 | whole organism · T_AE2 | whole organism | not recorded | T_AE2 | SRP459341 | 7.94 |
| SRR25982259 | whole organism · T_AE3 | whole organism | not recorded | T_AE3 | SRP459341 | 8.19 |
| SRR25982258 | whole organism · T_AES1 | whole organism | not recorded | T_AES1 | SRP459341 | 6.92 |
| SRR25982257 | whole organism · T_AES2 | whole organism | not recorded | T_AES2 | SRP459341 | 7.82 |
| SRR25982256 | whole organism · T_AES3 | whole organism | not recorded | T_AES3 | SRP459341 | 4.33 |
| SRR25982255 | whole organism · T_AAS1 | whole organism | not recorded | T_AAS1 | SRP459341 | 4.70 |
| SRR25982254 | whole organism · T_AAS2 | whole organism | not recorded | T_AAS2 | SRP459341 | 3.50 |
| SRR25982253 | whole organism · T_AAS3 | whole organism | not recorded | T_AAS3 | SRP459341 | 3.46 |
| SRR25982252 | whole organism · T_A1P | whole organism | not recorded | T_A1P | SRP459341 | 0.74 |
| SRR25982251 | whole organism · T_A2P | whole organism | not recorded | T_A2P | SRP459341 | 0.53 |
| SRR25982250 | whole organism · T_A3P | whole organism | not recorded | T_A3P | SRP459341 | 0.88 |
| SRR25982249 | whole organism · T_C1ES | whole organism | not recorded | T_C1ES | SRP459341 | 1.33 |
| SRR25982248 | whole organism · T_C2ES | whole organism | not recorded | T_C2ES | SRP459341 | 1.13 |
| SRR25982275 | whole organism · T_C1P | whole organism | not recorded | T_C1P | SRP459341 | 0.66 |
Source: CnidoSite RNA-seq expression matrices (ACOER_TPM,
StringTie quantification over 30 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Aurelia coerulea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 19 | evm.model.ptg000049l.52 | 0.970577573489433 |
| Negatively correlated | 4 | evm.model.ptg000007l.783 | -0.885714723417953 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Aurelia coerulea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
