Gene detail

Detailed information of evm.model.ptg000016l.2 in Aurelia coerulea

Genomic Location: chr17:20901842...20932336
NR annotation: XP_047134606.1, RNA polymerase-associated protein CTR9 homolog [Hydra vulgaris]
Species abbreviation ACOER · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.ptg000016l.2

ATGGCGACGTCCATCGAAATTCCCTTGAAAGATTCAGATGAGGTGATTGAACTTGACTTTGCTGAGCTCCCAGTTGGTGAAGAAGTCTTGAGCATATTGCAACAAGAAAATGCACAACTCCATATATGGATCACTATCGCTCAACAATACTACAAACAAAGCGAAACAGATGATTTCGTGAAGATCCTTGAAGCCGCACGAACAGGCAACTTCTCTGGATCCAATTTGGAATACGAAAATCATGATAATGATCAGATGTTGGTACTTGACACATTAGCTGCTTATTATGTGCAACAAGCACGAAAAGACAAAAATAAAGACCAAAAAAGAGAACTTTTCACCAAAGCAACTCAATTGTACACTACAGCTGATAAAATCATCATGTTGGACCAGAACCATCTTCTGGGCCGTGCATACTTCTGTTTGTTGGAAGGAGACAAGATGGATCAGGCAGATGCCCAGTTTAATTTTGTTTTGGATCAGAATTTAGTTTCATTTTTTATTTTTACAGGGAAAGCATGCATATCGTTCCAGAAAAGAGATTTCAAAGGAGCGCTGGTTTATTATAAAAAAGCGTTAAGAACTAATCCAAACTGTCCTGCTGAAGTTCGACTTGGAATGGGTCATTGTTTTTATCGTCTCAATCGTCTCGAAAAAGCAAGGCTTGCATTTGAAAGAGCTTTAGAACTTGACCCGAGATGTACTGGTGCCTTGGTTGGCCTTGCCATATTGGAACTCAACTCCAAAAAGCCCGACAGCATCAAAAACGGAGTTCAACTGTTGTCAAAAGCATATTCAATTGACAACCGAAATCCAATGGTCCTAAATCACTTGGCAAATCACTTCTTTTTTAAAAAGGATTACACAAAAGTACAGCATCTGGCATTGCATGCATTCCATGGTACAGAAGTTGAGGCTATGCAAGCTGAGAGTTGTTACCAATTAGCAAGATCTTTTCACGTGCAGGGTGATTACGATCAAGCTTTTCAATATTATTACCAAGCAACCCAGTTCGCTTCTCCAACATTTGTGCTGCCTTGGTTTGGACTGGGTCAAATGTACATTGCAAGAGGAGACAATGTGAATGCTGCAAATTGTTTTGAAAAGGTTTTGAAACATCAAGCGAATAATTATGAGACGATGAAGATTTTAGGATCATTGTATAGTACAGCAACAGAACCTGAAAAAAGGGAAACAGCCAAAAATCATTTGAAGAAAGTAACTGAACAATTTCCTGACGATGTGGAAGCATGGATCGAATACGCTGGAATCTTGGAACAGACTGATGTGCAGGCTGCCCTTTCTGCCTATGGTACAGCATCTCGTATTCTTAAAGACAAAGTACAAGCCGATGTCCCACCCGAAATTCTTAATAATGTTGGAGCATTGCACTTTCGACTTGGAAATCTCAAAGAAGCTCGCAAATTCTACGAGGCTGCGCTAGACCACTGCAAGCAAGAAAGTATGCAGGATGAAATCTACTACAATGCTATATCTGTGACGATGAATTACAATCTTGCACGACTTTATGAAGCATTATTTGAACTTGAAAAAGCTGACAAGATTTATAAAGATATCCTCAGGGAACATCCAAATTACATTGACTGTCATTTACGACTTGGTTGCATGGCTCGTGACAAAGGCCAGATTTACGATGCATCTGATTGGTTCAAAATGGCACTTTCAATAGATCAGGATAATCCAGATGCTTGGTCTTTGATTGGAAATTTGCATCTTGCTAAACAAGAATGGGGTCCTGGTCAAAAGAAATTCGAGCGAATTCTCAAACAACCAGCCACTACAAATGACACCTATTCATTAGTCGCCCTTGGTAATGTTTGGCTGCAGACATTGCACACACCAAATCGAGACAAGCTCAAGGAAAAGAGGCATCAGGATCGCGCCATCGCAATGTTTAAACAGGTCCTTCGCATTGATCCGAGAAATATTTATGCTGCAAATGGAATTGGTTGTGTTTTGGCTCATAAAGGATATTTTAGGGAAGCACGAGATGTATTTTCACAGGTTCGTGAAGCGACAGCAGAAGTGCCAGATGTTTGGTTGAACTTGGCCCATATTTATGTTGAACAAAAACAACATGTCAGTGCAGTTCAAATGTATGAAAATTGCATCAAGAAATTCTATACATCTTACAACGTTGAGCTGATGCTGTATCTAGCGAGAGCTTATTACAAAGCAGGCAAACACGATGAATGCAAAGCTTTGTTAGTTAAGGCTCGCCATGTTGCACCTCATGATTCATTGCTGATGTTTAATTTGTCAATTGTTCAACAAAGACTTGCAACTGGAGTATTGAGAACGGAAAAGAGTGATTTGAAGACCGTTTTATCGGCTGTGCGTGATTTGGAATTGGCGCAAAGGAATTTCGAATATTTGAGCAGATATGGAGACAGAATGAAATTTGATCTCGCTCAAGCGTTCGCTGAAGGAAGACGATGTGCTGATTTGCTGAGTCAAGCTCAATATCACGTACAAAGGGCAAGAAAGATTGACGAAGAAGAACGAGAAGTAAGGAGGAAACAAGAGGAAGAGAGAGACGCGTTGAAAAAGAAAAGAGATGAAGATTTGAAACAAAAGAAACTCGTAGAGGAAGAAGAACAAAAGAAACAGCTGGAAAAACGTGCGCAGTACATCGAAGCTACGAGAAATCTCTTGAAGTTTTCTTATGCTGCAGAAGCTGCAAAAGTTAAAGCAGGAAAAAAGAAAAGAGATGCAGATTTGGATGGTCTCATTGAGACAAGTGAATCCGAGGCTGAAGCAGGCGGCGAACCGAAACCACCAGGGGAAAAGAAAGAAAAAAAGAAAAGACAGCGCAAAAGGAAAGAAAGAGAAAGAGGAGAACCCAAGCCCAAAAAACAACGAAAACCAAGGGAACCAAAAGCAAAAGGAGCAAGGAAACAGAAGCCGGAACAGCTGTCAGCAAAACAAAAGAAAAAGATCGTTTCAAAACAATTCATTTCTTCTTCTGAAGATAATTCAAGTTCTGATGAAGATGGTTTGAAAATCGATGTTGCCAAGGGACGTGACGTAGGGTCATCAGAAAGTGAAAATGAAGAGAAAAGGCAACAATCCGATATTGAGAGGAGTGACGAGTCAGATAAGCACCAGTCCGATTCAGACAAAGATTCAGATAAAGATTCAGAAAGAGATTCAGATGAGGACTCAGGCATGCAAGATACCAAGAAATTAGCTAATGATCTGAACAGTGACATAGAGAGTGATCTCGAGAAGGAAACCCCAAAGAAGAAGAAACCAAATAGAGTGATTAGTTCATCCGAGTCAGATGAAGAATAA

Transcript

evm.model.ptg000016l.2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62018	RNA polymerase-associated protein CTR9 homolog OS=Mus musculus OX=10090 GN=Ctr9 PE=1 SV=2
Q6PD62	RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens OX=9606 GN=CTR9 PE=1 SV=1
Q6DEU9	RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis OX=8364 GN=ctr9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR031101 all species →	Family	RNA polymerase-associated protein Ctr9	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14027 all species →	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.