Gene detail

Detailed information of evm.model.ptg000017l.14 in Aurelia coerulea

Genomic Location: chr15:17211172...17288236
NR annotation: XP_046858855.1, 60S ribosomal protein L4-B-like [Xenia sp. Carnegie-2017]
Species abbreviation ACOER · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.ptg000017l.14

ATGTCAAGGAAGGTCTTGTTGTTGCTCTGTCTTCTGTTTTGCTTGTTTCGAGCATATAGCACTGAAAGCAGTGGAGAGATAACATCGAAATACCCATTGCCGTCCATTCTAAATGAGCAAGCACTTACTGTTGTGGTTCAAGGACGCACTGTGGTTCTAAAATGCCGCACAACGTGCGATTGCCCCCAGAAAGATGACATTAAAGTCTCATGGCTTGATAATGGTCATAAGGTGTCTATAGACAGTAGGACACAGGTGTCCAAAGCGGGAGAGCTGAGTATTAGAAATGTAACAAGTAGAAGTGTTGGAAAGAGAGTTTTCAAATGCGTAGCAAGCATTGGGAATTGGTCTGTAATTGGCGTTGAAAGACGAGTCAAAGTTATAGATCCGACGTCGCAGTCCGTCATTCTCCAACCCACGCAACAGACTCTTCCAAATAGCGGCCATGCGAGCCTTAGATGTAAGGTAGACGCCATTTTGAATTTATCAAAAAGCACGATGTCGTGGTATAAAGATGGCGCGTTGTTGTTGCTGTCAAATGATACAAAATATACACGATTGCCCGATGGCGTCCTAGTGATCCACTCATTGCGGAGGAAAGATGCTGGATCATATAGCTGTAAAGTTTATTCATCTTTGCTGCGGAGGAATTTAGTCAGCAACAGTGCAAATTTAACTATTGTAATGGGTGAAGTCAGGCTGAAACTGCCCTACTTCACGCATCGACCCAAAGACATCGAAATACTGGAGAGGAAGACCACTGCAATCCATTGTTCTGCGTCAGGGAATCCCATTCCTATTGTTACGATTTCACGGGAGAGAGGATACATGTTGTATGTGGATTTGGCGAAAGGTGTTGGTTTCGCAAATTTAACTCTGAGAAATGCCAAGATGAATAACACAGGGAAATATGTTTGCAGCGTGAAGTCAGGAGAAATCAAACTGCAGCATCCTGTGTGGATTAAAGTTTTATCGCCCCCGAAATTCACATCCGTCCCAGAGCCCCGAAAACTGACCCTGAAAGGAGTAAACTTATCGCTGTCATGTGTTGCTACTGGTAGACCTACCCCTGTCATCACGTGGCACAAGAATGGTAAGCCACTACCCATGGCAGATAACGACATTGCAGAAGGAAAAGGCACGATTACAATTGCGTCGCAATCGAAAAATGACATAGGAATATATCAATGTTTTGCGATGAATAAAGTTGGAAGTGTCAGTCATGCTACCTTTGTGTTCATGGAAACCGCCGTACGACCTCCAGTCAACATCAACGCCGTTGCCACAACGCATTCACGTGTGAAAGTCACGTGGCAGCTAAACCCATTGAACAATATAGCTGCAGTATTAACGCATATCGTTAGCTATGAATATCACACGAGTTCTTCACAGAGTTCACGCAAGACAAAGGTTATGTCTACTGCGGAAATCACCGATTCTGAGATCGGTCCGCTCCTTGGTGGCACTGAATACTCCGTTTATGTCACGACCTATGGAATGATTGGCGGAAAAAGCACGAGGTCGGAGGTAATCAAAGTTAAGACGCTTGAGAATGTTCCAAGCATCCCTCCGCAGCCTATTGATGTACAGAATCTTGGCAATAAGACTATGAGAGTATCGTGGACACCAATCCCTCGTAAATTCGCAATGGGTACTGTGATCAGATACAAGGTGAAGTATGGAATAGCTGGTATTGAGAACAAAGAGATCTTAATTCCCATGGGGAAAACTCATGTCAACATTAGCAACCTTCAAATTGGCGAGTTGTACACGATTGAAGTTTCTGCAGAGACCAGCGCGGGATTTGGTCCCGCGGAGAAGACTACTATCAAGATTGGAGATCCTGGAATCGCAGCCCGTAATGGACCACCAGTGGAATTTACCACTGTCAACAGCACATCGATACGTGCCCATTGGAAGCTCAAAGAGGACCAAAACGACATCACCGGTTTCAAATTAGTATGCATCCCCATCCGGTACGCTGATTACTGGCATGAAGCCCGGATTATCAGTTTGCCGCCAACGACCAATGAATACATCATAAGCGGTTTGAATCCGGAGAAAGACTACCGCATTGAGTTGAGGATAATATCCGGTCCGGTGCTTAGCAAACCGTCCATTGTTGTTTACACGAGGCACCGGCGTAAACCGATACCGGGCGATCTGAAGCTACTTGATGTCTCGAATCCGCGTGAGCTCAAATGTGCCGCTAAAGGCAAACGGTCGTTGTTTTTGTCATGGGAGAAACCGCTCAAGAATAGGGATATTAATGATTATTCTGTGATTATTGTCGTCGGTGGCAAGAAGATCAAGGATTACACGCCATTCCGCACGAAAAATTTGGATTATGTTTTGAAGGATCTTCGACCCGGCACTTGGTATTATATAAAAGTGGACGCGAACCCAAGACGTGACCGACTCACCAAAGTACAAGAGCAGTTGAAGAGGGCGGTCACAGCGAAATTTGAGAGTAATGTGGTTGCATGCAAGACAGCGGAGTCAGCACCCGGTCCTCCAACCAAGCTTTACTGCAATGTCACCAAGGATGGACACAAAGCAAAAGTCACGTGGTACCCACCCATGTATCCGAATGGCCTTATCACGAATTACGTCATTCGATACCGGGTTCGGTCAAAGAAATACAAGACAAAATGGACCATAGACACGCTGAAAATGAAACCGAATAACAAAGGGTTTCCGCTGGAGCAGCAGTTGAAGGGTGATTATTACAAGACGTATGAAATCGAGGTTCTTGCCGTGAATAGTGCTGGAGTCGGAAAGAGTGCGAAGATTGAAACCTGTGCACTGAAGAGGAGTATAGAACGACCACTGCCGTCTGGTGTAACGACGAAGAAGCCGAAGAAGGGTGATGATATAATGTCAAATGATACCATACTTGGGATTATTGTTGGCTGCTCAATCGCGTCGTTATTTATATTTACGTTCATTGGCGTGTTCATCTGGAAGAATCCTTTCAGAGTGAAGTCACTGGAAAGCCAAAAAACAGATGCAAATAAGGCAAATGAAAATGGCATGTATGCGGAAGATTACTTGTATCTTCAAAGATTGGCCGAATTACGCAATTCGTTGACTCAAGAGGGCAGTGAATGTAGCACAAGATGTGCTGCCACGCCGTCAGGATCGAATGGTCGAGCGAGTGGCGATAAAGACATGACAGGAGCGTCAGAACCATTGATGGCTAGGTATCATCAAACTGTCATGGAGTTAACGGGGAGTTCTAGTGGTCAAGCTGTTTGTACATGCACATGTCTCTTACACGGGCGGTTACGTGGAAAGTCGTTAGGCGCGCTGGAGAAGCGTGAATACACGTCCACGTCAACGAGCACGCGTGAAGATAACCAGAACCATAAAAACAATCATACAAATTCATCAAATAGTAGTAGTAGTGGTACATCGGAAGGTGTCGATTCAGCTGAATCAGCTGATAGCAGAACTAAGATGCTGCCGAAGTCTGATGCATCATCATATGTTGTAAAAGACCCAACTGCATGCACGAAAGCAATGCATCAAAAGAAAAAGGATAGCAAATTTCAAGCGACAAGACCGTTAGTAACAGTTTTCAGTGATCAAGGTGAACAGGCGGAAACAGCTGAACAAGTGCCTCTCCCAACAGTCTTCTGTGCCCCCATTCGACATGATGTTGTCAATTTTGTGCACACAAATGTGGCCAAGAACAAGAGACAGCCCTATGCTGTGAGCCGCTTAGCTGGTCACCAGACCTCAGCTGAATCATGGGGAACAGGACGTGCTGTTGCACGTATCCCTCGTGTCCGAGGTGGTGGTACCCACAGATCTGGCCAGGGTGCTTTTGGTAACATGTGCCGTGGTGGACGTATGTTTGCACCAACAAGAATTTGGCGCAAATGGCACCGTCATGTCAACAAAAACCAGAGACGATTTGCCACTGTCTCTGGTATTGCTGCCACAGCTCTCCCAGCCCTCGTTATGGCACGTGGACATAAAATTGAACAAGTTCCAGAAGTACCACTTGTCGTCTCAAATGGAATGGAAAGTGTCACAAAGACAAAGGCTGCCATTGCACTGCTTAAAAAATTGAATGCCTATGATGATGTTCAGAAATGTATTGATTCCAAAAAGATCAGAGCTGGAAAGGGTAAAATGCGAAACAGACGATACACAATGCGTAGAGGACCACTGATTATTTACAATGAAGACCATGGCATTCGTCAAGCCTTCAGAAATGTTCCTGGAGTTGAAATGATGAAAGTTGACAGACTCAATTTACTCAACTTATGTCCTGGTGGTCATCTTGGCCGATTCTGTATCTGGACTAAAGGTGCATTTGACAGACTTGATTCACTTTATGGAACGTGGCGCAAGAAGTCCTCTGAGAAGAACAATTACAATCTTCCTCGACCAAAGATGGCTAACCCTGACCTCACTCGATTGATCAATTCTGATGAAATACAGAAAGCAATCAGACCAAGGAAGCCCAAAGCACACCGCGCGATCCTGAAAAAGAATCCTCTGAAGAACGTCGACGTCATGCTGCGGTTGAATCCATACGCAAAGACAATGAAGCGGACTGCTATTCTCACTGCGGAACGAAGAGTTGCCGCGAAGAAAGAAGCCCTGGATAAGAGAAGAGGCGCGCAGCAACAACAACAAAAGGCATGA

Transcript

evm.model.ptg000017l.14

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D8E6	Large ribosomal subunit protein uL4 OS=Mus musculus OX=10090 GN=Rpl4 PE=1 SV=3
Q58DW0	Large ribosomal subunit protein uL4 OS=Bos taurus OX=9913 GN=RPL4 PE=2 SV=3
P36578	Large ribosomal subunit protein uL4 OS=Homo sapiens OX=9606 GN=RPL4 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006123 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF14374 all species →	Ribos_L4_asso_C	60S ribosomal protein L4 C-terminal domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00573 all species →	Ribosomal_L4	Ribosomal protein L4/L1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR023574 all species →	Homologous_superfamily	Large ribosomal subunit protein uL4 domain superfamily	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR025755 all species →	Domain	Large ribosomal subunit protein uL4, C-terminal domain	Interproscan
IPR002136 all species →	Family	Large ribosomal subunit protein uL4	Interproscan
IPR045240 all species →	Family	Large ribosomal subunit protein uL4, eukaryotic and archaeal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19431 all species →	60S RIBOSOMAL PROTEIN L4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.ptg000017l.14.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.