Genomic Location: chr21:16586199...16587392
NR annotation: APW77285.1, SoxF1 [Hydractinia echinata]
Species Aurelia coerulea · all data for this species · gene families
| CDS |
| evm.model.ptg000028l.1069 |
| Transcript |
| evm.model.ptg000028l.1069 |
| Protein |
| evm.model.ptg000028l.1069 |
| UniProt accession | Description |
|---|---|
| P40657 | Putative transcription factor SOX-15 OS=Drosophila melanogaster OX=7227 GN=Sox15 PE=2 SV=2 |
| Q8AWH2 | Transcription factor Sox-17-beta.1 OS=Xenopus tropicalis OX=8364 GN=sox17b.1 PE=2 SV=1 |
| Q6F2F0 | Transcription factor Sox-17-beta.3 OS=Xenopus tropicalis OX=8364 GN=sox17b.3 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000393 (this species only) · gene tree & orthology |
| Transcription factor family | HMG · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR050140 all species → | Family | SRY-related HMG-box transcription factors | Interproscan |
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10270 all species → | SOX TRANSCRIPTION FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0009653 all species → | Biological Process | anatomical structure morphogenesis | Interproscan |
| GO:0030154 all species → | Biological Process | cell differentiation | Interproscan |
evm.model.ptg000028l.1069.Transcript abundance of evm.model.ptg000028l.1069 across 30 RNA-seq samples of Aurelia coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
Every sample in this dataset carries its own condition — the source metadata gives each run a distinct treatment label — so this table is effectively a sample list. The per-sample chart below is the informative view here.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · T_A1ES | 1 | 1 | 2.06 | 2.06 | |
| whole organism · T_C3E | 1 | 1 | 6.23 | 6.23 | |
| whole organism · T_C2P | 1 | 1 | 1.14 | 1.14 | |
| whole organism · T_A2ES | 1 | 1 | 4.58 | 4.58 | |
| whole organism · T_A3ES | 1 | 1 | 3.40 | 3.40 | |
| whole organism · T_C1AS | 1 | 1 | 8.52 | 8.52 | |
| whole organism · T_C2AS | 1 | 1 | 5.26 | 5.26 | |
| whole organism · T_C3AS | 1 | 1 | 4.08 | 4.08 | |
| whole organism · T_A1AS | 1 | 1 | 4.90 | 4.90 | |
| whole organism · T_A2AS | 1 | 1 | 1.85 | 1.85 | |
| whole organism · T_A3AS | 1 | 1 | 5.46 | 5.46 | |
| whole organism · T_C1E | 1 | 1 | 4.75 | 4.75 | |
| whole organism · T_C2E | 1 | 1 | 6.19 | 6.19 | |
| whole organism · T_C3P | 1 | 1 | 1.08 | 1.08 | |
| whole organism · T_AE1 | 1 | 1 | 10.31 | 10.31 | |
| whole organism · T_C3ES | 1 | 1 | 8.25 | 8.25 | |
| whole organism · T_AE2 | 1 | 1 | 6.89 | 6.89 | |
| whole organism · T_AE3 | 1 | 1 | 8.80 | 8.80 | |
| whole organism · T_AES1 | 1 | 1 | 14.15 | 14.15 | |
| whole organism · T_AES2 | 1 | 1 | 24.31 | 24.31 | |
| whole organism · T_AES3 | 1 | 1 | 12.20 | 12.20 | |
| whole organism · T_AAS1 | 1 | 1 | 14.71 | 14.71 | |
| whole organism · T_AAS2 | 1 | 1 | 6.60 | 6.60 | |
| whole organism · T_AAS3 | 1 | 1 | 5.81 | 5.81 | |
| whole organism · T_A1P | 1 | 1 | 1.01 | 1.01 | |
| whole organism · T_A2P | 1 | 1 | 0.68 | 0.68 | |
| whole organism · T_A3P | 1 | 1 | 1.47 | 1.47 | |
| whole organism · T_C1ES | 1 | 1 | 3.53 | 3.53 | |
| whole organism · T_C2ES | 1 | 1 | 5.03 | 5.03 | |
| whole organism · T_C1P | 1 | 1 | 2.56 | 2.56 |
Source: CnidoSite RNA-seq expression matrices (ACOER_TPM,
StringTie quantification over 30 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
