Genomic Location: chr21:14689703...14749243
NR annotation: XP_047127073.1, otoferlin isoform X2 [Hydra vulgaris]
Species Aurelia coerulea · all data for this species · gene families
| CDS |
| evm.model.ptg000028l.994 |
| Transcript |
| evm.model.ptg000028l.994 |
| Protein |
| evm.model.ptg000028l.994 |
| UniProt accession | Description |
|---|---|
| Q9ERC5 | Otoferlin OS=Rattus norvegicus OX=10116 GN=Otof PE=1 SV=2 |
| Q9HC10 | Otoferlin OS=Homo sapiens OX=9606 GN=OTOF PE=1 SV=3 |
| Q9ESF1 | Otoferlin OS=Mus musculus OX=10090 GN=Otof PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000314 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08150 all species → | FerB | FerB (NUC096) domain | Domain | Interproscan |
| PF08151 all species → | FerI | FerI (NUC094) domain | Domain | Interproscan |
| PF00168 all species → | C2 | C2 domain | Domain | Interproscan |
| PF16165 all species → | Ferlin_C | Ferlin C-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012561 all species → | Domain | Ferlin B-domain | Interproscan |
| IPR012968 all species → | Domain | FerIin domain | Interproscan |
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR037722 all species → | Domain | Ferlin, third C2 domain | Interproscan |
| IPR037723 all species → | Domain | Ferlin, fourth C2 domain | Interproscan |
| IPR032362 all species → | Domain | Ferlin, C-terminal domain | Interproscan |
| IPR037725 all species → | Domain | Ferlin, sixth C2 domain | Interproscan |
| IPR037721 all species → | Family | Ferlin family | Interproscan |
| IPR037720 all species → | Domain | Ferlin, second C2 domain | Interproscan |
| IPR037724 all species → | Domain | Ferlin, fifth C2 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12546 all species → | FER-1-LIKE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0007009 all species → | Biological Process | plasma membrane organization | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19949 | OTOF; otoferlin | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.ptg000028l.994 across 30 RNA-seq samples of Aurelia coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
Every sample in this dataset carries its own condition — the source metadata gives each run a distinct treatment label — so this table is effectively a sample list. The per-sample chart below is the informative view here.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · T_A1ES | 1 | 0 | 0.00 | 0.00 | |
| whole organism · T_C3E | 1 | 1 | 1.83 | 1.83 | |
| whole organism · T_C2P | 1 | 1 | 0.52 | 0.52 | |
| whole organism · T_A2ES | 1 | 1 | 0.56 | 0.56 | |
| whole organism · T_A3ES | 1 | 1 | 1.01 | 1.01 | |
| whole organism · T_C1AS | 1 | 1 | 0.93 | 0.93 | |
| whole organism · T_C2AS | 1 | 1 | 0.40 | 0.40 | |
| whole organism · T_C3AS | 1 | 1 | 0.54 | 0.54 | |
| whole organism · T_A1AS | 1 | 1 | 1.77 | 1.77 | |
| whole organism · T_A2AS | 1 | 1 | 1.63 | 1.63 | |
| whole organism · T_A3AS | 1 | 1 | 1.22 | 1.22 | |
| whole organism · T_C1E | 1 | 1 | 1.33 | 1.33 | |
| whole organism · T_C2E | 1 | 1 | 1.01 | 1.01 | |
| whole organism · T_C3P | 1 | 1 | 0.28 | 0.28 | |
| whole organism · T_AE1 | 1 | 1 | 3.20 | 3.20 | |
| whole organism · T_C3ES | 1 | 1 | 0.94 | 0.94 | |
| whole organism · T_AE2 | 1 | 1 | 2.78 | 2.78 | |
| whole organism · T_AE3 | 1 | 1 | 2.67 | 2.67 | |
| whole organism · T_AES1 | 1 | 1 | 2.91 | 2.91 | |
| whole organism · T_AES2 | 1 | 1 | 2.82 | 2.82 | |
| whole organism · T_AES3 | 1 | 1 | 1.02 | 1.02 | |
| whole organism · T_AAS1 | 1 | 1 | 2.22 | 2.22 | |
| whole organism · T_AAS2 | 1 | 1 | 2.05 | 2.05 | |
| whole organism · T_AAS3 | 1 | 1 | 1.77 | 1.77 | |
| whole organism · T_A1P | 1 | 1 | 0.26 | 0.26 | |
| whole organism · T_A2P | 1 | 1 | 0.25 | 0.25 | |
| whole organism · T_A3P | 1 | 1 | 0.25 | 0.25 | |
| whole organism · T_C1ES | 1 | 1 | 0.73 | 0.73 | |
| whole organism · T_C2ES | 1 | 1 | 0.85 | 0.85 | |
| whole organism · T_C1P | 1 | 1 | 0.19 | 0.19 |
Source: CnidoSite RNA-seq expression matrices (ACOER_TPM,
StringTie quantification over 30 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
