Genomic Location: scaffold121:962013...973661
NR annotation: WP_013943168.1, 3-oxoacyl-ACP reductase FabG [Simkania negevensis]
Species Morbakka virulenta · all data for this species · gene families
| CDS |
| scaffold121.g150.t1 |
| Transcript |
| scaffold121.g150.t1 |
| Protein |
| scaffold121.g150.t1 |
| UniProt accession | Description |
|---|---|
| P96593 | Divalent metal cation transporter MntH OS=Bacillus subtilis (strain 168) OX=224308 GN=mntH PE=1 SV=1 |
| Q9RTP8 | Divalent metal cation transporter MntH OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=mntH PE=1 SV=1 |
| A1JLC3 | Divalent metal cation transporter MntH OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=mntH PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001931 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00106 all species → | adh_short | short chain dehydrogenase | Domain | Interproscan |
| PF01566 all species → | Nramp | Natural resistance-associated macrophage protein-like | Family | Interproscan |
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001046 all species → | Family | NRAMP family | Interproscan |
| IPR002347 all species → | Family | Short-chain dehydrogenase/reductase SDR | Interproscan |
| IPR020904 all species → | Conserved_site | Short-chain dehydrogenase/reductase, conserved site | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR016036 all species → | Homologous_superfamily | Malonyl-CoA ACP transacylase, ACP-binding | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11706 all species → | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0030001 all species → | Biological Process | metal ion transport | Interproscan |
| GO:0046873 all species → | Molecular Function | metal ion transmembrane transporter activity | Interproscan |
| GO:0005384 all species → | Molecular Function | manganese ion transmembrane transporter activity | Interproscan |
| GO:0015086 all species → | Molecular Function | cadmium ion transmembrane transporter activity | Interproscan |
| GO:0071281 all species → | Biological Process | cellular response to iron ion | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00123 | fdoG, fdhF, fdwA; formate dehydrogenase major subunit | EC:1.17.1.9 | Methane metabolism | ko00680 | deepkoala |
Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
