Genomic Location: scaffold121:479299...507209
NR annotation: MCB0383983.1, efflux RND transporter permease subunit [Bdellovibrionales bacterium]
Species Morbakka virulenta · all data for this species · gene families
| CDS |
| scaffold121.g76.t1 |
| Transcript |
| scaffold121.g76.t1 |
| Protein |
| scaffold121.g76.t1 |
| UniProt accession | Description |
|---|---|
| Q6MDF6 | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=gatB PE=3 SV=1 |
| Q6MDF5 | Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=gatA PE=3 SV=1 |
| D0JNB0 | Multidrug resistance protein MdtB OS=Yersinia pestis (strain D182038) OX=637385 GN=mdtB PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010772 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02934 all species → | GatB_N | GatB/GatE catalytic domain | Domain | Interproscan |
| PF02637 all species → | GatB_Yqey | GatB domain | Domain | Interproscan |
| PF13533 all species → | Biotin_lipoyl_2 | Biotin-lipoyl like | Domain | Interproscan |
| PF00873 all species → | ACR_tran | AcrB/AcrD/AcrF family | Family | Interproscan |
| PF01425 all species → | Amidase | Amidase | Family | Interproscan |
| PF02321 all species → | OEP | Outer membrane efflux protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027463 all species → | Homologous_superfamily | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | Interproscan |
| IPR018027 all species → | Domain | Asn/Gln amidotransferase | Interproscan |
| IPR006075 all species → | Domain | Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic | Interproscan |
| IPR042114 all species → | Homologous_superfamily | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 | Interproscan |
| IPR004413 all species → | Family | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | Interproscan |
| IPR001036 all species → | Family | Acriflavin resistance protein | Interproscan |
| IPR004412 all species → | Family | Glutamyl-tRNA(Gln) amidotransferase A subunit | Interproscan |
| IPR039562 all species → | Domain | Membrane fusion protein, biotin-lipoyl like domain | Interproscan |
| IPR036928 all species → | Homologous_superfamily | Amidase signature (AS) superfamily | Interproscan |
| IPR014746 all species → | Homologous_superfamily | Glutamine synthetase/guanido kinase, catalytic domain | Interproscan |
| IPR006143 all species → | Family | RND efflux pump, membrane fusion protein | Interproscan |
| IPR003789 all species → | Homologous_superfamily | Aspartyl/glutamyl-tRNA amidotransferase subunit B-like | Interproscan |
| IPR023631 all species → | Domain | Amidase signature domain | Interproscan |
| IPR003423 all species → | Family | Outer membrane efflux protein | Interproscan |
| IPR020556 all species → | Conserved_site | Amidase, conserved site | Interproscan |
| IPR017958 all species → | Conserved_site | Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32063 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016884 all species → | Molecular Function | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | Interproscan |
| GO:0016874 all species → | Molecular Function | ligase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0030956 all species → | Cellular Component | glutamyl-tRNA(Gln) amidotransferase complex | Interproscan |
| GO:0050567 all species → | Molecular Function | glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0042910 all species → | Molecular Function | xenobiotic transmembrane transporter activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0015562 all species → | Molecular Function | efflux transmembrane transporter activity | Interproscan |
scaffold121.g76.t1.Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |