Genomic Location: scaffold145:1429494...1443347
NR annotation: XP_014771006.1, proliferating cell nuclear antigen [Octopus bimaculoides]
Species Morbakka virulenta · all data for this species · gene families
| CDS |
| scaffold145.g36.t1 |
| Transcript |
| scaffold145.g36.t1 |
| Protein |
| scaffold145.g36.t1 |
| UniProt accession | Description |
|---|---|
| P57761 | Proliferating cell nuclear antigen OS=Cricetulus griseus OX=10029 GN=PCNA PE=1 SV=1 |
| P17918 | Proliferating cell nuclear antigen OS=Mus musculus OX=10090 GN=Pcna PE=1 SV=2 |
| Q3ZBW4 | Proliferating cell nuclear antigen OS=Bos taurus OX=9913 GN=PCNA PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007934 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02747 all species → | PCNA_C | Proliferating cell nuclear antigen, C-terminal domain | Domain | Interproscan |
| PF00705 all species → | PCNA_N | Proliferating cell nuclear antigen, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046938 all species → | Homologous_superfamily | DNA clamp superfamily | Interproscan |
| IPR000730 all species → | Family | Proliferating cell nuclear antigen, PCNA | Interproscan |
| IPR022649 all species → | Domain | Proliferating cell nuclear antigen, PCNA, C-terminal | Interproscan |
| IPR022648 all species → | Domain | Proliferating cell nuclear antigen, PCNA, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11352 all species → | PROLIFERATING CELL NUCLEAR ANTIGEN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006275 all species → | Biological Process | regulation of DNA replication | Interproscan |
| GO:0030337 all species → | Molecular Function | DNA polymerase processivity factor activity | Interproscan |
| GO:0006272 all species → | Biological Process | leading strand elongation | Interproscan |
| GO:0006298 all species → | Biological Process | mismatch repair | Interproscan |
| GO:0019985 all species → | Biological Process | translesion synthesis | Interproscan |
| GO:0043626 all species → | Cellular Component | PCNA complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04802 | PCNA; proliferating cell nuclear antigen | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
