Gene detail

Detailed information of scaffold28.g56.t1 in Morbakka virulenta

Genomic Location: scaffold28:1808866...1855782
NR annotation: XP_029179720.2, uncharacterized protein LOC114947217 [Acropora millepora]
Species Morbakka virulenta · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold28.g56.t1

ATGTTGACCTCAATATTTCTTTGCCTTTTCATTACGTTAACAGAAATATCGCTTTCAAGTTGTTCAGCTGGAGATAGATCTCCAGTCTTTCTTGATTGTCTGTATGATGATTGTGCCCTGACTTGTCATGAGATAGATTTACCTGTTCATTTGCAACTGCTAGGATGGACATGCCTGGACAATTGTAAATATGAATGTATGCGTAACATTACTCTTCAAAGGAAGATAAATGGTAAACAAGTTCTGCAATATTATGGCAAGTGGCCATTTGTAAGACTATTTGGAATTCAGGAACCAGCATCAGTGGTCTTCAGTTTCCTGAACTTGTTAGGACATGTTTTTGGTTTGAAGAAACTGAGTTCTGTTGCAGGGATAACAACATTTCCTGGTTACAGGATTATGAAAATCAATTTTTTTtttttggacacacaatggtccaagaaatctgtaccgaacagaggtttggctacagctggcgggaaaacttcagtgcagcgcaacattgttctggaacgtatgcttgcactgattgcacaatttgtgccttctttgttacgaaacgatatcatcaagaaaagcactagtttacactggatatggcaacgcataaggaagcactactctttctcccaatcggaagtcaatttcctcaaactttccaccattaaacgtgacagcgacgaacgttatgaaacattctttcaaaggattatggcccatctcgaggacaacctcttaaccaccgattcaggtctcattcacgacggtgagctaccagacacaaatgaagaaatgtcacctacgttagaacgcttagctgtctacatgtggctgaatctcattgatgaacgcctacccgctcacgttgcaagggtgtacgcacacgatttacaaaccaaaacgttgaaagagattcaaccgcaacttgcagatgcaatggactgccttattgcggagttatctgtccaggaagacatctccatcaactactcaaattcacgacgtttcgcccatcaaggacaagcatcatcccgtgaacgctcatttccatctaaaccgtcctcgtcaaatacaaagtcctgtatcctgtgtaaatctgctggtagaaatcatcaaggccacaatatctctggctgttggttcctgtcgaaatttgacaaactaaacattgccaaggctcttgcagtaactgttgatgaagagcttccccaatcagaaacatctgcccaggagactgctatgtatcaagtcatcccagaatcagatgtccagaaagtacaatgtgacatttcaccttttttctacgctttctgcaaacatcatcctacacatatcgtgatagatacaggagctacttcatcccttgtctcacgcaccttcctcaaacgtgctggtatttcaatcatgccaacccaacattctgctcgttccgtcgataaaacaaccttgaagatttgtggggaggttcacttacaaatgaactttggctcaacgcttctcccaattactgccttagtcgtcgacacactggattgtgacatcctagctggtgtaccattctgtgttcagaacgacgtccacgttcatcttaaagacaagatgataactattggcaaatccaagatcccatatggttccaagcctacaccggtctctgacatcttcctcgctgaatcattcatcctacgcagtgattcaactcttaccatcttccctggggaatatcttgagttccaaagtgacactttgaaagaatatgagggtgaaattgctatcgaaccccaccgatcttctcctttaaatggcatgtggcctgaacctgacatctcaagggtaattgacggcagcatacgcataccgaatgactccaatgttccagtcacattaacaaaatctcaacattttgcactaatccgtcgcgtcatgtcaccacttgacattaacatacccaatcatcgttacagcagtccaccatcgaaggctcctaccatacctactgctcaatgcttttccgacacgatttcattagatcctgatggccaacttaataaaacacacctgcatcaattccgcaccatccaccaaaaatatgactcagtatttaatcctgaatttggagcatacaacgaccatagtggaaccatacgtgccaaagtgaacattggtaatgttcaccctccacctcggaaaggcaagcttccattttacaaacaatcaaatctacagctattgcaagaggaggcggataaacttgagcaactaggtgttttagcgaagccagaagacgttaatgttgacgttgaatacgtctctcccagtttccttacagccaaacccaacggaggctacagattggtaactgcttttaatgttctgggccaatacaccaaaattctcccaacggtatcagtgacttgcaatgacgtcctgcaaaaactctctaggtggaagtacttaatcaagtcagaccttacaaaaagcttcttccaaatccctgtttccaaagcatccatgaaatacctcggcactgttacacccttcaagggtttacgcgtatacaccagatccgctatgggaatgccaggttcttcagaatatcttcaagagcttatgcatcgtatcttcggtgactttattcaacaaggttttgtcattattatggctgacgatattcacgtctgtggcaacaccatcgaagaactgttagacaactgggaaaaagtgctctatctcctctcccagaataatctgaacctgtctgcatccaaaactgtgatttgcccaattgaaaccaccattttgggttggaaatggaagaatggtaccctcacaccatgtgcccacaaaatcgcccctttagccactgttcaaccaccagctacctgcacctccatgagatcattcattggtgcatttaaggccctctccagatgcatcccacgctactcatctctcatagctcctttggaagacgccatcaaagggttgcaaggccaacagcaagttgattggacagaccaactccgtgcacagtttgccagatgccaagaagaagttcgttccccccatacaattaccattccgcgaccagatgataagctcactttgactgttgacgcatctccgttgaaccacggattgggtgccactctattcatcaatcgggatggtcatcgccatatcagcgggtttttcagtttcaaactaaaacagcatcaaattggatggcttccgtgtgagcacgaagcactcgccatttcgtcagccatacgaaactttgctccttatattcgcgactcccatcactctacccaagtcctcactgacagcaagccatgcgtggaagcataccagaagctgtgcaaaggacagttctccacttctaatagggtttctacattcctatccacactgagcgaattcaatgtcactgtttgccacatccaaggaacttcaaaccaatctagtgattacagctcgcgacacccaaatcaatgccctgatcattcatgtcaaatatgcaaattcatccaagaaagcattgattctgtcgtgaaccacgtgtcagttgctgacatcctttccggcgcagtccgtatgccattcctgaacaacaatgcctggcactctgctcaacaagaatgccctgcactgcgtcgcacctttgctcacctccaacaaggcactcgtcctccaagaaaggccaggcatgtcactgatatcaggcgatacctacgcatagcttccatctcaactaatggtttacttgtagtcacaaaaaacgatccatatatccacgaacgtcgcctcatcgtagttcctgctgccttgttacccggactactagcagctttacatctccagctcagccatcccaccaaaagtcagcttcagaaagcattcgatcgctacttttatgccttggatagcgttcaacacattgaagcagctacatcacactgtcacacatgccaatccttaaaacgcctaccgctcgaagtgcatgctcaacattcctccacaacaccactccaccccggacagcagttttccgctgatgtcttgtatcgtaccaaacagaaaatctttgtttctcgcgacattttctccagctacactgacgctacatttatagccgatgaacgagcagacaccttacgttccgcaattttgtccttaacacacttcctacgatcaaaaaccactttgattcgcgttgacagtgcaactggattccaatcattgaaaaatgacaaaattttgaactcctatggtattacactggacttcggccgcattaagaacaagaacagtaatgccacaattgataaagggattcaagagctagaacttgagcttctaaaagtcgagcgtactggcagaccattgacacaacttacattagaaagcgctctgaataatttgaactctcgaatccgaacacgaggtttgtcagctaaagaaattgtgcaacgccgagagcagttgtctggcagggagataaacatcaatgacaaagaactagctagtgctcaagatcatcttcgaaagcagaatcataactccagtgcaatttccaaagcccgcgggggaaagcctgctacaagcgccaacgtccaggttggagacttggttttcattaaacatgaaggctcaaagcataaatctcgcgaacaatacatagtcgtaaatgttgaagataccactgctattgtccagaagttcaatgacagtacctttgcatcacgcaagtaccacgttcctctgacatcaatattcccagctcttcctcgtaccttccacccgacgtttcatgattgggatttacatgatgattcggtatttcctgatgcctttagcgatcacgagctaccccacattgactctccagctgaacggctggaagaagaagaagaagaagaagaagaagaagtaccagacGTTAATATTCATGCTTGGATATGGTCTATGATTTTTCATACAAGAGATTTAGAATTTACAGAGGTTAATATTCATGCTTGGATATGGTCTATGATTTTTCATACAAGAGATTTAGAATTTACAGAGAAAATGGATTACTTCACAGCTTCATCACTTGTCATGTTTTCAGTATTTGTCAGCATTGTAAGGTAA

Transcript

scaffold28.g56.t1

GAGCAGTGTTGACTGGAATCAGACCAACATACAGCGTCCATAAAATAGGTCAACCCATCCACCAATAATTATCAATTTATTCTCTTGTTCAACAACGTCTCATAAGTCAAATTACAGCACCAAGAACCAAGTGACAAACCGAATATTACTTGGCGTAACAAAGCACATAAAAACGTCAAGGAAATCGCTGATATACTTATTACAGAAGACAACGACTCGCACACAGCCGAAAAGGAGATTTATTCTGACGGGAAAGTTTGGACCAAGAAAGCTGGCAACTTGATGAAACAGAAGCTAGTTATTGTGCTGCGATGAAGAAAATCATGCTGATAAACCCCTTTTCCTAAATTTATTTGTATGACGATCTGTTGAAATTTTAAAGGAGTTGTAACTGGGACTGACAAGAGCTCAGTCTTAAATGACATGTTGACCTCAATATTTCTTTGCCTTTTCATTACGTTAACAGAAATATCGCTTTCAAGTTGTTCAGCTGGAGATAGATCTCCAGTCTTTCTTGATTGTCTGTATGATGATTGTGCCCTGACTTGTCATGAGATAGATTTACCTGTTCATTTGCAACTGCTAGGATGGACATGCCTGGACAATTGTAAATATGAATGTATGCGTAACATTACTCTTCAAAGGAAGATAAATGGTAAACAAGTTCTGCAATATTATGGCAAGTGGCCATTTGTAAGACTATTTGGAATTCAGGAACCAGCATCAGTGGTCTTCAGTTTCCTGAACTTGTTAGGACATGTTTTTGGTTTGAAGAAACTGAGTTCTGTTGCAGGGATAACAACATTTCCTGGTTACAGGATTATGAAAATCAATTTTTTTtttttggacacacaatggtccaagaaatctgtaccgaacagaggtttggctacagctggcgggaaaacttcagtgcagcgcaacattgttctggaacgtatgcttgcactgattgcacaatttgtgccttctttgttacgaaacgatatcatcaagaaaagcactagtttacactggatatggcaacgcataaggaagcactactctttctcccaatcggaagtcaatttcctcaaactttccaccattaaacgtgacagcgacgaacgttatgaaacattctttcaaaggattatggcccatctcgaggacaacctcttaaccaccgattcaggtctcattcacgacggtgagctaccagacacaaatgaagaaatgtcacctacgttagaacgcttagctgtctacatgtggctgaatctcattgatgaacgcctacccgctcacgttgcaagggtgtacgcacacgatttacaaaccaaaacgttgaaagagattcaaccgcaacttgcagatgcaatggactgccttattgcggagttatctgtccaggaagacatctccatcaactactcaaattcacgacgtttcgcccatcaaggacaagcatcatcccgtgaacgctcatttccatctaaaccgtcctcgtcaaatacaaagtcctgtatcctgtgtaaatctgctggtagaaatcatcaaggccacaatatctctggctgttggttcctgtcgaaatttgacaaactaaacattgccaaggctcttgcagtaactgttgatgaagagcttccccaatcagaaacatctgcccaggagactgctatgtatcaagtcatcccagaatcagatgtccagaaagtacaatgtgacatttcaccttttttctacgctttctgcaaacatcatcctacacatatcgtgatagatacaggagctacttcatcccttgtctcacgcaccttcctcaaacgtgctggtatttcaatcatgccaacccaacattctgctcgttccgtcgataaaacaaccttgaagatttgtggggaggttcacttacaaatgaactttggctcaacgcttctcccaattactgccttagtcgtcgacacactggattgtgacatcctagctggtgtaccattctgtgttcagaacgacgtccacgttcatcttaaagacaagatgataactattggcaaatccaagatcccatatggttccaagcctacaccggtctctgacatcttcctcgctgaatcattcatcctacgcagtgattcaactcttaccatcttccctggggaatatcttgagttccaaagtgacactttgaaagaatatgagggtgaaattgctatcgaaccccaccgatcttctcctttaaatggcatgtggcctgaacctgacatctcaagggtaattgacggcagcatacgcataccgaatgactccaatgttccagtcacattaacaaaatctcaacattttgcactaatccgtcgcgtcatgtcaccacttgacattaacatacccaatcatcgttacagcagtccaccatcgaaggctcctaccatacctactgctcaatgcttttccgacacgatttcattagatcctgatggccaacttaataaaacacacctgcatcaattccgcaccatccaccaaaaatatgactcagtatttaatcctgaatttggagcatacaacgaccatagtggaaccatacgtgccaaagtgaacattggtaatgttcaccctccacctcggaaaggcaagcttccattttacaaacaatcaaatctacagctattgcaagaggaggcggataaacttgagcaactaggtgttttagcgaagccagaagacgttaatgttgacgttgaatacgtctctcccagtttccttacagccaaacccaacggaggctacagattggtaactgcttttaatgttctgggccaatacaccaaaattctcccaacggtatcagtgacttgcaatgacgtcctgcaaaaactctctaggtggaagtacttaatcaagtcagaccttacaaaaagcttcttccaaatccctgtttccaaagcatccatgaaatacctcggcactgttacacccttcaagggtttacgcgtatacaccagatccgctatgggaatgccaggttcttcagaatatcttcaagagcttatgcatcgtatcttcggtgactttattcaacaaggttttgtcattattatggctgacgatattcacgtctgtggcaacaccatcgaagaactgttagacaactgggaaaaagtgctctatctcctctcccagaataatctgaacctgtctgcatccaaaactgtgatttgcccaattgaaaccaccattttgggttggaaatggaagaatggtaccctcacaccatgtgcccacaaaatcgcccctttagccactgttcaaccaccagctacctgcacctccatgagatcattcattggtgcatttaaggccctctccagatgcatcccacgctactcatctctcatagctcctttggaagacgccatcaaagggttgcaaggccaacagcaagttgattggacagaccaactccgtgcacagtttgccagatgccaagaagaagttcgttccccccatacaattaccattccgcgaccagatgataagctcactttgactgttgacgcatctccgttgaaccacggattgggtgccactctattcatcaatcgggatggtcatcgccatatcagcgggtttttcagtttcaaactaaaacagcatcaaattggatggcttccgtgtgagcacgaagcactcgccatttcgtcagccatacgaaactttgctccttatattcgcgactcccatcactctacccaagtcctcactgacagcaagccatgcgtggaagcataccagaagctgtgcaaaggacagttctccacttctaatagggtttctacattcctatccacactgagcgaattcaatgtcactgtttgccacatccaaggaacttcaaaccaatctagtgattacagctcgcgacacccaaatcaatgccctgatcattcatgtcaaatatgcaaattcatccaagaaagcattgattctgtcgtgaaccacgtgtcagttgctgacatcctttccggcgcagtccgtatgccattcctgaacaacaatgcctggcactctgctcaacaagaatgccctgcactgcgtcgcacctttgctcacctccaacaaggcactcgtcctccaagaaaggccaggcatgtcactgatatcaggcgatacctacgcatagcttccatctcaactaatggtttacttgtagtcacaaaaaacgatccatatatccacgaacgtcgcctcatcgtagttcctgctgccttgttacccggactactagcagctttacatctccagctcagccatcccaccaaaagtcagcttcagaaagcattcgatcgctacttttatgccttggatagcgttcaacacattgaagcagctacatcacactgtcacacatgccaatccttaaaacgcctaccgctcgaagtgcatgctcaacattcctccacaacaccactccaccccggacagcagttttccgctgatgtcttgtatcgtaccaaacagaaaatctttgtttctcgcgacattttctccagctacactgacgctacatttatagccgatgaacgagcagacaccttacgttccgcaattttgtccttaacacacttcctacgatcaaaaaccactttgattcgcgttgacagtgcaactggattccaatcattgaaaaatgacaaaattttgaactcctatggtattacactggacttcggccgcattaagaacaagaacagtaatgccacaattgataaagggattcaagagctagaacttgagcttctaaaagtcgagcgtactggcagaccattgacacaacttacattagaaagcgctctgaataatttgaactctcgaatccgaacacgaggtttgtcagctaaagaaattgtgcaacgccgagagcagttgtctggcagggagataaacatcaatgacaaagaactagctagtgctcaagatcatcttcgaaagcagaatcataactccagtgcaatttccaaagcccgcgggggaaagcctgctacaagcgccaacgtccaggttggagacttggttttcattaaacatgaaggctcaaagcataaatctcgcgaacaatacatagtcgtaaatgttgaagataccactgctattgtccagaagttcaatgacagtacctttgcatcacgcaagtaccacgttcctctgacatcaatattcccagctcttcctcgtaccttccacccgacgtttcatgattgggatttacatgatgattcggtatttcctgatgcctttagcgatcacgagctaccccacattgactctccagctgaacggctggaagaagaagaagaagaagaagaagaagaagtaccagacGTTAATATTCATGCTTGGATATGGTCTATGATTTTTCATACAAGAGATTTAGAATTTACAGAGGTTAATATTCATGCTTGGATATGGTCTATGATTTTTCATACAAGAGATTTAGAATTTACAGAGAAAATGGATTACTTCACAGCTTCATCACTTGTCATGTTTTCAGTATTTGTCAGCATTGTAAGGTAATGTAGCTTAAGGATTAATCGGAAGTTAAGAGATGTAAAAATTTACCTCATTGGTAGTATACTTTCATCCATTTTCTTGCATCATGTTTACCACATGAACTTTGTGAAATTTGATTACGGATATAATATTAAATTCAATGTAATAATTGGATGCTTGAATGTAGCACTCTGGTTGCTGTGGTGCTTTGTTAAAAGGAAAGAAAGACCATATGTTTGGAAGTGTGCTGCAGTTGTGACGTCAGTCTTTTTCTTTCTTGGATTAGAGGTTTTTGACTTTCCTCCCATTTATGATACATTTGATGCACATTCTCTCTGGCACTTAGCAACAGCACCTCTTTCGTACTTCTGGTACAGCTTTTTGGTTGATGACGCAGAATATGAGATTTCTCGCTCAATTAAAGAGGACTGATtttt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VFE3	GPI-specific phospholipase A2-like PGAP3 OS=Xenopus tropicalis OX=8364 GN=pgap3 PE=2 SV=1
A7YWP2	GPI-specific phospholipase A2-like PGAP3 OS=Bos taurus OX=9913 GN=PGAP3 PE=2 SV=1
Q96FM1	GPI-specific phospholipase A2-like PGAP3 OS=Homo sapiens OX=9606 GN=PGAP3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000244 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04080 all species →	Per1	Per1-like family	Family	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007217 all species →	Family	Per1-like	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13148 all species →	PER1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold28.g56.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →