Genomic Location: scaffold289:879318...925674
NR annotation: CAH3120991.1, unnamed protein product [Pocillopora meandrina]
Species Morbakka virulenta · all data for this species · gene families
| CDS |
| scaffold289.g28.t2 |
| Transcript |
| scaffold289.g28.t2 |
| Protein |
| scaffold289.g28.t2 |
| UniProt accession | Description |
|---|---|
| A0A481WNP4 | Hybrid PKS-NRPS synthetase traA OS=Penicillium crustosum OX=36656 GN=traA PE=3 SV=1 |
| B8NJG3 | Hybrid PKS-NRPS synthetase lepA OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=lepA PE=3 SV=1 |
| S0EEY3 | Fusarin C synthetase OS=Gibberella fujikuroi (strain CBS 195.34 / IMI 58289 / NRRL A-6831) OX=1279085 GN=FUS1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000672 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08659 all species → | KR | KR domain | Family | Interproscan |
| PF21089 all species → | PKS_DH_N | Polyketide synthase dehydratase domain | Domain | Interproscan |
| PF00550 all species → | PP-binding | Phosphopantetheine attachment site | Domain | Interproscan |
| PF14765 all species → | PS-DH | Polyketide synthase dehydratase N-terminal domain | Domain | Interproscan |
| PF00975 all species → | Thioesterase | Thioesterase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036736 all species → | Homologous_superfamily | ACP-like superfamily | Interproscan |
| IPR049900 all species → | Domain | Polyketide/metazoan fatty acid synthase, dehydratase domain | Interproscan |
| IPR020806 all species → | Domain | Polyketide synthase, phosphopantetheine-binding domain | Interproscan |
| IPR013968 all species → | Domain | Polyketide synthase, ketoreductase domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR049552 all species → | Domain | Polyketide synthase, dehydratase domain, N-terminal | Interproscan |
| IPR029058 all species → | Homologous_superfamily | Alpha/Beta hydrolase fold | Interproscan |
| IPR050444 all species → | Family | Polyketide Synthase Enzyme | Interproscan |
| IPR009081 all species → | Domain | Phosphopantetheine binding ACP domain | Interproscan |
| IPR042104 all species → | Homologous_superfamily | Polyketide synthase, dehydratase domain superfamily | Interproscan |
| IPR049551 all species → | Domain | Polyketide synthase, dehydratase domain, C-terminal | Interproscan |
| IPR001031 all species → | Domain | Thioesterase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45681 all species → | POLYKETIDE SYNTHASE 44-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0031177 all species → | Molecular Function | phosphopantetheine binding | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
scaffold289.g28.t2.Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
