Genomic Location: scaffold37:807441...927005
NR annotation: XP_046859509.1, neurogenic locus Notch protein-like isoform X6 [Xenia sp. Carnegie-2017]
Species Morbakka virulenta · all data for this species · gene families
| CDS |
| scaffold37.g25.t1 |
| Transcript |
| scaffold37.g25.t1 |
| Protein |
| scaffold37.g25.t1 |
| UniProt accession | Description |
|---|---|
| P81439 | Equistatin OS=Actinia equina OX=6106 PE=1 SV=2 |
| P06882 | Thyroglobulin OS=Rattus norvegicus OX=10116 GN=Tg PE=1 SV=4 |
| P01267 | Thyroglobulin OS=Bos taurus OX=9913 GN=TG PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000982 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00100 all species → | Zona_pellucida | Zona pellucida-like domain | Family | Interproscan |
| PF00086 all species → | Thyroglobulin_1 | Thyroglobulin type-1 repeat | Domain | Interproscan |
| PF07648 all species → | Kazal_2 | Kazal-type serine protease inhibitor domain | Domain | Interproscan |
| PF00093 all species → | VWC | von Willebrand factor type C domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000716 all species → | Domain | Thyroglobulin type-1 | Interproscan |
| IPR002350 all species → | Domain | Kazal domain | Interproscan |
| IPR036058 all species → | Homologous_superfamily | Kazal domain superfamily | Interproscan |
| IPR036857 all species → | Homologous_superfamily | Thyroglobulin type-1 superfamily | Interproscan |
| IPR001507 all species → | Domain | Zona pellucida domain | Interproscan |
| IPR001007 all species → | Domain | VWFC domain | Interproscan |
| IPR000083 all species → | Domain | Fibronectin, type I | Interproscan |
| IPR003884 all species → | Domain | Factor I / membrane attack complex | Interproscan |
| IPR042235 all species → | Homologous_superfamily | Zona pellucida, ZP-C domain | Interproscan |
| IPR003645 all species → | Domain | Follistatin-like, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13866 all species → | SPARC OSTEONECTIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005518 all species → | Molecular Function | collagen binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0048856 all species → | Biological Process | anatomical structure development | Interproscan |
| GO:0050840 all species → | Molecular Function | extracellular matrix binding | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
scaffold37.g25.t1.Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |