Gene detail

Detailed information of scaffold437.g7.t4 in Morbakka virulenta

Genomic Location: scaffold437:130974...197195
NR annotation: CAH3115626.1, unnamed protein product, partial [Pocillopora meandrina]
Species abbreviation MVIRU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

scaffold437.g7.t4

AACATTTTATCACAACATCCTAAAACCTGTGGCATCCAAACCTTTAAAACCTCTTCCATGGAGATAAAGAAAGAGAAATTTGACAGGGAAGGGGAGGAGTCATTTAATAAGCTCCGAAAATGTATCCAAGACACACATGAAGCAGTGGCTTTATGCTTATCAAATAAATTCACGGAAGCGCGTGCTCACCTTGAACCAAGGGAAGGGGAGGAGTCATTTAATAAGCTCCGAAAATGTATCCAAGACACACATGAAGCAGTGGCTTTATGCTTATCAAATAAATTCACGGAAGCGCGTGCTCACCTTGAACCAAGCGCCGAAGATAGTATGTACCATGCACTTGGATTCGCAACCATTGCCTATCTCCAAGCGATAATGACCTATGAGCAGGATGTAATCGAGATGGCTTACAAGTGTGTAAAAAAGGCGCTGGAGGTGTGTGACAGGTCAAGGCGAAAAGCAACGTGGACTGAATCACTGTATAACTTGGTTGGAAGGCCTTATTTTGATGATTACACGGAAGAGGAAATTCATGCAGAACTTTGCTACGCTGAATGCTTGTTAGAAAGAGCAATTTTGACTTTCATACAGGATGAAAACTTAATCAATTTCATTAAAGGAGGTTTGAAAATTAGAAATGCATATCATTTATACAAGTCCTGTCTGTCTTTGATGAACCAGTGCCCGAAGTCGTTGTCAGCTTCCGAAAACAGAGAGGATTTCGAAGGTGGAGTCCATTTGGGAGTTGGCACATTTAATCTTCTATTATCACTTCTGCCGGCAAGGATACTAAGGTTACTGGAATGGGCAGGATTTTCGGGAAATAAGAGATACGGTTTAGGACACCTTGGACAAGGTGTTAGCAAAGCTGGCATCCGATCACCATTGTGCGCCGTTACCCTTCTCGGGTACCATATTGTTGTAAGCCCAATCCTAGGAATCGGGGATACAGATGTTGAATTTGCTGAAAAGATTTTAAGAGAATGTTTGAATGACTATCCTGAGGGGGCTATTTTCCTCTTTTATCAAGGAAGACTTGCACAAGTTCAAGGACAATTGACGGAGGCCATCGGATGTTACAACAGATCTGTGAATGTAAATGTTGATTGGAAGCAAGTCCATCACGTCTGCTTTTGGGAACTTATGTGGTGTCATAGCTTTCAGTGTGAATGGTCGACCGCAGCTTCATATGCAGCTACATTAGCTGCGGAAAGTAAATGGTCAAAGACCGCCTACCTATACCTTGAGGCAAGTTTTCGGATGATGGCAGCTAAAGAGGAACCAGGCGGTAACATTTCGGAAGAACAACTACAAAAAATAGAGGAAATGTTACGCCTTGTACCTGAGTACAAACAAAGAATAGCAGGGAAATCACTTCCATTTGAAAAGTTTGCCGTGTACAAAGCAAAGAAATACTTTGAAAGCAAAAGATTGTTAATTTTACCGGGATTGgagctgatttatgtttggaacggGAATAATGCTGTTGTACTTGACAGTTATTTGGCGCCCTTTGCCTCTGGTGAAATTGCATTTCTTCATAAGTCACAGGGGCGATTTGACGATGCCATTGAGCAATTTGAATACACAAGGAAACATTTTACTGGCTACCACTTAGAAAGCCGTCTTCACTTCAGACTACACTCAAATCTACAAGCGATAAAGGATAGGATTAATGGTGACAGTGACGTCACACATGTAACTGGATTAGAGGATGCTGCAGATACTTTGCCAAAACCGAGCGAAACTGTGACATCAACCACACCAACTATGTCTAGAAAAGAAACAACTGTTTGATCTCATCATCTATGTGCATTTATTAAAGTTTGCTTCCACATGTGGTACACCTCTGAAGGTTTTACAAACTAAATACTCACATATTTGATAAAGTTATTCTTAAATAATGTTGCGAGGAAGCTTAAATGTTTATATAACTGGATAAGTCTCTAGACTGAAGAAAACCAGTCGAAAGGCTCGGTGATTTTGCAAAATGTTACAAGAATGTGACCATTGGCCCTCAGGCACAGACACGTACAATTGAGGCCACTGCCCACTTTTGCTTCCTTTTGTAGTCTTCAGACATCTCGCTACTTTACTGTGAATGACTGGTTTCAATTTTCTTTGCGCCCCAGAAACCTGTTTCTACCACTAGCCTCATACCTTTTTGTTACTACATTCAGAACGAGAACTATAAACTATTtggcgtggtgtgtggttgggggtgggggatgggggtgATGTCATTGTTTCCTTCTTTCCTTCTTCATAATGAAGTAAGTAACTCATGACCAGTTGTAACGAAACGTAATATTTCCGTTGGTAAATATTACGTTTATTACGGTTCACGTTGGTAAAAACGTGAACCATTTTCTTGAAAAACCTTTGCTGTGTATGATGTACATAAAAAGGAGTGACTTGTCCCATGTTTACTGGTGTGTAGTTTAAATCTCCGATCTCGTCGTTTTTTGCTTGGTACTAAATGTATCCTCCAATCTTATTCCTTTCAATTAAGAAGTTTATCGTTCTTTTAATTCCATCCAAGGCCAGTAATTACTTCGAAAGGAAATGCACACAATTATTGTTTATCGCTTGCTAGTTGGAGGGACTTGTCACTTCAGTACCACACACATTTAGACAGACTATCAGAGATGTACTTCTGTTAATTAAAAGCCCTTGATGTGCTTTCCTTCCCAATATCTCGTCACTTAAAATGAAACAAAATCTACTTTTGTTTAGAAAATGATATGGAATAATTAACGACTAAACCTCGTTTGCTTTCTCCGCAATGCAAATATTGGTAGATTCTGAGTGTAAAGCTGGATAATACAGAAATTTGATTAATAAGAAATGTTAGATTGTTGATAAAGTAAACTTGTTACGTGTTTAAGGTCCGAGGCCTTACTTCCAAAATGGACTGTAACGGTGAGACGCTTAATCTCTGAATACGATATTCCTAGTATATCGGTTGAATTCTGTTTTAAGATTCGTTTTAGTAACGCGTGTTATTTTTTTCTGCTTTTGTTAAAAATGGTGAAAAGTGGAGGGTATAAGAATTTACGTATTGGCGAGTGAAATTGGAACTGAAAAGAGGCGCAGTTTCTGACAAATTTAGCGAGGGTATGTTTTGAGTGTATTTATAAATATTTAGTGTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2ACP1	Tetratricopeptide repeat protein 39A OS=Mus musculus OX=10090 GN=Ttc39a PE=2 SV=1
Q8BYY4	Tetratricopeptide repeat protein 39B OS=Mus musculus OX=10090 GN=Ttc39b PE=1 SV=1
D3ZC96	Tetratricopeptide repeat protein 39B OS=Rattus norvegicus OX=10116 GN=Ttc39b PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001963 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10300 all species →	Iml2-TPR_39	Iml2/Tetratricopeptide repeat protein 39	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019412 all species →	Family	Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31859 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24943	TTC39; tetratricopeptide repeat protein 39	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.