Detailed information of scaffold456.g7.t1 in Morbakka virulenta

Genomic Location: scaffold456:334156...340888
NR annotation: RMX50907.1, hypothetical protein pdam_00016119 [Pocillopora damicornis]
Species Morbakka virulenta · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35433Amidophosphoribosyltransferase OS=Rattus norvegicus OX=10116 GN=Ppat PE=1 SV=1
Q8CIH9Amidophosphoribosyltransferase OS=Mus musculus OX=10090 GN=Ppat PE=1 SV=1
Q06203Amidophosphoribosyltransferase OS=Homo sapiens OX=9606 GN=PPAT PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006575 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00156
all species →
PribosyltranPhosphoribosyl transferase domainDomainInterproscan
PF13522
all species →
GATase_6Glutamine amidotransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029057
all species →
Homologous_superfamilyPhosphoribosyltransferase-likeInterproscan
IPR000836
all species →
DomainPhosphoribosyltransferase domainInterproscan
IPR005854
all species →
FamilyAmidophosphoribosyltransferaseInterproscan
IPR029055
all species →
Homologous_superfamilyNucleophile aminohydrolases, N-terminalInterproscan
IPR035584
all species →
DomainAmidophosphoribosyltransferase, N-terminalInterproscan
IPR017932
all species →
DomainGlutamine amidotransferase type 2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11907
all species →
AMIDOPHOSPHORIBOSYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004044
all species →
Molecular Functionamidophosphoribosyltransferase activityInterproscan
GO:0009113
all species →
Biological Processpurine nucleobase biosynthetic processInterproscan
GO:0006164
all species →
Biological Processpurine nucleotide biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for scaffold456.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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