Gene detail

Detailed information of scaffold540.g1.t1 in Morbakka virulenta

Genomic Location: scaffold540:2475...80975
NR annotation: KAI8516306.1, hypothetical protein Bbelb_048870 [Branchiostoma belcheri]
Species Morbakka virulenta · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold540.g1.t1

ATGGCTACTGAACAAGATTTAGAAGGTTGTGTACAATATTTGACCTCAAAACACATCCTGGTTCAGCGTGAATGGGTTGAAGCATGTTTGGAGTGGGTTCTTGCTGAAAGCCAGGTTAAACCAATACCTTGTTGGAAACTACATGAGCTTATTTATGAGCAATGGTTAATGGCTGACTTGCAAGAAATAAGTATACCATGCCTAAAACAAGATCATTTTAAAGAAAATGGTCATGGATTATTACAGGGAAATTTTATGCTGCAGcaatggcgaagagttagatctgggacagaaatagaaggattacagacgacaacttctgttgtccctcttgatgtatccatgacgagcttggatgaaagccgagaggaagttcatgctctgaaaacccagatcttctccgccaaacatcacacaaagttcggtacatggaatgtacggactatgtacgaaacaggaaaattagcacaagttataaaagaaatgaaaagataccggttggaaatattaggggttagcgaaactagatggactgggcaaggtagtttatcaagtgaagggatcaccattttatattctggatgtgaaacagaccacatgagaggagtagcgatactgctgaatagggaagccacagatgcattgattagctgggagccggtctcggatagaattatcactgctagattacaaggtcgactactaaagacatcgatagtacaaatatatgcaccaactgagagtgcagatcaagaggcaaaggagagattctacacacagctgcaggatactattgacagccttcctagccacgacttgaagatcataatgggagattggaatgcaaaaataggatcagatcgaacaggattcacagatgtaataggtccacatggctcagcaaacagcacaaatgataatggagagagaatgatggacttttgcaatgagaatgacctacgcattggcaatagctttttcaaacacagatatattcacaaatggacatggagatcaccagatgaaaacacttgtaatgaaatagattacatctgcataagcaagaggtgggggtcatctttgttggacgtacgagcttttagaggtgcagatgtgttctctgatcaccaactacttggagggaagattagaatgaagctgaagaaaatgcagaaacggtcaagcagaaaagcatatgatgtggagaaattactcaatccggaggtttcagagaggtttcaacagcatttgtccaaccgttttgcagtccttcaaagggacacagacatcacagaaaagtggatatctttcagagatgccatcaatgaatctgccagtagtgttgttggacagaaaagaggaaggaaaaaggaacaatggattgcagaagatacatggaagcttattgatgaacggagagcattaaagaattcaagagatacagctagaaccagagagcaagcaagaggtgcacaagaacaatacaagcgtaaggacagagccgtgaaaagaagttgtaggagagacaaacacgactggtttgagaagaaaactagagaagcacaggctgctgcagatcaaaacaatacaagagaactgttcaaaatagcaaaacagctttccggaaaaagtagttccattaatgttccagtaaaaaataaggatggccgcattctagcaaccgaggaagagcaaaacaaaaggtggatggaccatttcaaagagattctcaatcagccccctccagacatagtgtacgaatggaacaacattgatacagcacacgagttgaatgtagaaatgggaccaatacaaagagaagaagtgagaaaagctatagacaaaatgaaaaataacaaagctccagggattgacggcataaacagcgaattcttgaaggccggaggacctacagtggtagaggagttgacaactctatttaacaagatttggcaggaaagcacagtaccagaagaatggagaaaaggagtgatagtaaagctaccgaagaaaggagatctctcagactgcaacaattggagaggcataaccttactttgtaccaccgggaaagtgtttaacagaattattttgagaagaatactgacagcagcagattgtaaactacgggaggaacaagcaggtttcagggaagggagatcatgttgtgaacagatttttgttttgaggaatatcatagagcaaagtttagaatatcagtcaccagtcgtattgaactttatagatttccggaaagcttttgatagtattcacagagaatccttgtggaaaatcttgaaagtatacgggataccggaaaagattataaccctcttgaagtctttttacaatcatccaacgtgtggagtgagaactaactcaggaatgactgatgaatttgaattgttctctggagttcgacaaggctgtatattgtctccttttctatttatagtatgtttagattttgttatgagaagaacgatgacgaatgaaaattttggaataccatggaaggatgatagaaagctcacagatcttgatttcgcagatgatatagccttattagcccaaaatgtcacaaagtgtcaacaggtaacagacagactccaacttgaaagctcgaaggtgggtttgcgcatcaacgaaggaaaaagtaagataatgaaggttaacaactaccaaatacagcaagtgagtgtcaatggaaatccactcgaagaagtagagaagttcccatatcttggaagctatttgacagaattaggcgaggtggaaacagatttgaatgccagattaggaaaagcaggggcgacctttagaacaatgaatcatatatggaaatcaagacaaatcaatgtaaaaacaaagattaaactatacatggctatagttgtttcaacagcattgtatgctagtgaaacatggaagaccaccaagagaatagaaagaaaactggatgctttccacacacgaaacttgagaagaattcttggaattacatggagggacagggtcaccaatgaagaaatttatagacgaacagagcaagggcaattacacaagaaagtagaagagagacgatggagacttgcaggacatgtgctcagattaccacccagcagatacgcgaagcaaGTGAATTACTCTGTTAATATAAATGAATCAGCATTTTCACAATACCAGAGGCTAAAAGGTATGGAAATCGATGAGAGCGTAGAGGGCCCTGAGATAAAACAGGACTTTAGAGACAGCAAGCAAAAATACAAGCCTTCAAGAATGATATTCTTGCTGTTAACTGACGGTTCCACAGAAATAGAAGCAATAGAATACAGTCAAATACCTGGTTTCGATAAAATGCTTGAACCTGGTTGTAAGATACATCTTCGTGGACCAATAAGTTTCTTTGATGGCCTCTTATTGTTACGAAATGAGAATGTTTCGATTCTTGGTGGAAATGCGGAAGACTTAAATGTGAAATTCTCTAGAGCAGCTTTGTTGAAAACAACTCTTGGTATTACAGATGAAAATACACCCCCAAGATTAGCTGGTCGTTTAGTGGAAGCTTCAAATATTGGCATTAAGAACAACAATACCGCAGACATGTTTCCCTTCCAAGACGATGATGATATATTTGACGATGTGCCAGCTTTTGAGCTTTTTGCCCCTACTGATGGGAACATAAACAGTGTGAAGTCATCGAATTTTATTAAAGATGACTTTAGGGTGGCAAAGAAATCTCCATTTGATCCAGAATCTATAAGTACTGTGAATGCTGATGTTTCGAAGGCCGACATTCAGACGGACTCGACAAATGCAAGTTATAAAGGGGCTACGGAAATGTTAGATCCTTCACCCACCATTCCTGATTTTGTTAATGATTCTAAAGATTTGGAGGATTTCACTGAAGATTGCGAAGTATTCAGTAAAGCGGGAGAAGGTTTTTCTTCAAGATTGGCGAATTCTAGTTTTACTTTGAATTCCACACAAAATGAAATAAACAGTTTAGTACGAGCTGTTGACGTAACCGGAGACCCGACCTTTACTAACCAAACTAATAAGAATAATGCTCCACCAACGCAATACAAGAAATTTTCAGAGTCACTTGCTGAAGACAGAGTTACCACATTGAATACTATTTTGAAGTTTGAAGAGAGTAAACAAACAACATTTAGAGCAAAGGTTCGTGTTTCGTCATTGGTATCGCAACTGCGTACATCGCCATCATATTTTTTGAAGGTCCAGCTTAGCGACGGAACGGGCAAACTGGAAGCCACTTTAGATTCCAAGGTGATAACACAGATTATAGGTTATTCAGCTGAAGAACTGGAGCgtttcaagacaactcaccccagactcagaaagagtgttaagcagGCAGTGATGAATAGTCAAAGAAAATTAGCATCTGCTTTATGGTTTGCAGATATTGTAAAGTTGGAGGGTGAACAACGATCAAGTTACAAAATCACAAGTATGAATGAAATGACTTGA

Transcript

scaffold540.g1.t1

GTCACAGTTAGCCCAGATGGCTTGGGTGACCCGTATTTGTGAAAGGATGTCTTGAAAAATGATTAAATCGAATCTGAGTTTAATGAATGTTACTTGCTGTCAAATGATGCAGTTATTGAATTTTGTTCACCATGGCTACTGAACAAGATTTAGAAGGTTGTGTACAATATTTGACCTCAAAACACATCCTGGTTCAGCGTGAATGGGTTGAAGCATGTTTGGAGTGGGTTCTTGCTGAAAGCCAGGTTAAACCAATACCTTGTTGGAAACTACATGAGCTTATTTATGAGCAATGGTTAATGGCTGACTTGCAAGAAATAAGTATACCATGCCTAAAACAAGATCATTTTAAAGAAAATGGTCATGGATTATTACAGGGAAATTTTATGCTGCAGcaatggcgaagagttagatctgggacagaaatagaaggattacagacgacaacttctgttgtccctcttgatgtatccatgacgagcttggatgaaagccgagaggaagttcatgctctgaaaacccagatcttctccgccaaacatcacacaaagttcggtacatggaatgtacggactatgtacgaaacaggaaaattagcacaagttataaaagaaatgaaaagataccggttggaaatattaggggttagcgaaactagatggactgggcaaggtagtttatcaagtgaagggatcaccattttatattctggatgtgaaacagaccacatgagaggagtagcgatactgctgaatagggaagccacagatgcattgattagctgggagccggtctcggatagaattatcactgctagattacaaggtcgactactaaagacatcgatagtacaaatatatgcaccaactgagagtgcagatcaagaggcaaaggagagattctacacacagctgcaggatactattgacagccttcctagccacgacttgaagatcataatgggagattggaatgcaaaaataggatcagatcgaacaggattcacagatgtaataggtccacatggctcagcaaacagcacaaatgataatggagagagaatgatggacttttgcaatgagaatgacctacgcattggcaatagctttttcaaacacagatatattcacaaatggacatggagatcaccagatgaaaacacttgtaatgaaatagattacatctgcataagcaagaggtgggggtcatctttgttggacgtacgagcttttagaggtgcagatgtgttctctgatcaccaactacttggagggaagattagaatgaagctgaagaaaatgcagaaacggtcaagcagaaaagcatatgatgtggagaaattactcaatccggaggtttcagagaggtttcaacagcatttgtccaaccgttttgcagtccttcaaagggacacagacatcacagaaaagtggatatctttcagagatgccatcaatgaatctgccagtagtgttgttggacagaaaagaggaaggaaaaaggaacaatggattgcagaagatacatggaagcttattgatgaacggagagcattaaagaattcaagagatacagctagaaccagagagcaagcaagaggtgcacaagaacaatacaagcgtaaggacagagccgtgaaaagaagttgtaggagagacaaacacgactggtttgagaagaaaactagagaagcacaggctgctgcagatcaaaacaatacaagagaactgttcaaaatagcaaaacagctttccggaaaaagtagttccattaatgttccagtaaaaaataaggatggccgcattctagcaaccgaggaagagcaaaacaaaaggtggatggaccatttcaaagagattctcaatcagccccctccagacatagtgtacgaatggaacaacattgatacagcacacgagttgaatgtagaaatgggaccaatacaaagagaagaagtgagaaaagctatagacaaaatgaaaaataacaaagctccagggattgacggcataaacagcgaattcttgaaggccggaggacctacagtggtagaggagttgacaactctatttaacaagatttggcaggaaagcacagtaccagaagaatggagaaaaggagtgatagtaaagctaccgaagaaaggagatctctcagactgcaacaattggagaggcataaccttactttgtaccaccgggaaagtgtttaacagaattattttgagaagaatactgacagcagcagattgtaaactacgggaggaacaagcaggtttcagggaagggagatcatgttgtgaacagatttttgttttgaggaatatcatagagcaaagtttagaatatcagtcaccagtcgtattgaactttatagatttccggaaagcttttgatagtattcacagagaatccttgtggaaaatcttgaaagtatacgggataccggaaaagattataaccctcttgaagtctttttacaatcatccaacgtgtggagtgagaactaactcaggaatgactgatgaatttgaattgttctctggagttcgacaaggctgtatattgtctccttttctatttatagtatgtttagattttgttatgagaagaacgatgacgaatgaaaattttggaataccatggaaggatgatagaaagctcacagatcttgatttcgcagatgatatagccttattagcccaaaatgtcacaaagtgtcaacaggtaacagacagactccaacttgaaagctcgaaggtgggtttgcgcatcaacgaaggaaaaagtaagataatgaaggttaacaactaccaaatacagcaagtgagtgtcaatggaaatccactcgaagaagtagagaagttcccatatcttggaagctatttgacagaattaggcgaggtggaaacagatttgaatgccagattaggaaaagcaggggcgacctttagaacaatgaatcatatatggaaatcaagacaaatcaatgtaaaaacaaagattaaactatacatggctatagttgtttcaacagcattgtatgctagtgaaacatggaagaccaccaagagaatagaaagaaaactggatgctttccacacacgaaacttgagaagaattcttggaattacatggagggacagggtcaccaatgaagaaatttatagacgaacagagcaagggcaattacacaagaaagtagaagagagacgatggagacttgcaggacatgtgctcagattaccacccagcagatacgcgaagcaaGTGAATTACTCTGTTAATATAAATGAATCAGCATTTTCACAATACCAGAGGCTAAAAGGTATGGAAATCGATGAGAGCGTAGAGGGCCCTGAGATAAAACAGGACTTTAGAGACAGCAAGCAAAAATACAAGCCTTCAAGAATGATATTCTTGCTGTTAACTGACGGTTCCACAGAAATAGAAGCAATAGAATACAGTCAAATACCTGGTTTCGATAAAATGCTTGAACCTGGTTGTAAGATACATCTTCGTGGACCAATAAGTTTCTTTGATGGCCTCTTATTGTTACGAAATGAGAATGTTTCGATTCTTGGTGGAAATGCGGAAGACTTAAATGTGAAATTCTCTAGAGCAGCTTTGTTGAAAACAACTCTTGGTATTACAGATGAAAATACACCCCCAAGATTAGCTGGTCGTTTAGTGGAAGCTTCAAATATTGGCATTAAGAACAACAATACCGCAGACATGTTTCCCTTCCAAGACGATGATGATATATTTGACGATGTGCCAGCTTTTGAGCTTTTTGCCCCTACTGATGGGAACATAAACAGTGTGAAGTCATCGAATTTTATTAAAGATGACTTTAGGGTGGCAAAGAAATCTCCATTTGATCCAGAATCTATAAGTACTGTGAATGCTGATGTTTCGAAGGCCGACATTCAGACGGACTCGACAAATGCAAGTTATAAAGGGGCTACGGAAATGTTAGATCCTTCACCCACCATTCCTGATTTTGTTAATGATTCTAAAGATTTGGAGGATTTCACTGAAGATTGCGAAGTATTCAGTAAAGCGGGAGAAGGTTTTTCTTCAAGATTGGCGAATTCTAGTTTTACTTTGAATTCCACACAAAATGAAATAAACAGTTTAGTACGAGCTGTTGACGTAACCGGAGACCCGACCTTTACTAACCAAACTAATAAGAATAATGCTCCACCAACGCAATACAAGAAATTTTCAGAGTCACTTGCTGAAGACAGAGTTACCACATTGAATACTATTTTGAAGTTTGAAGAGAGTAAACAAACAACATTTAGAGCAAAGGTTCGTGTTTCGTCATTGGTATCGCAACTGCGTACATCGCCATCATATTTTTTGAAGGTCCAGCTTAGCGACGGAACGGGCAAACTGGAAGCCACTTTAGATTCCAAGGTGATAACACAGATTATAGGTTATTCAGCTGAAGAACTGGAGCgtttcaagacaactcaccccagactcagaaagagtgttaagcagGCAGTGATGAATAGTCAAAGAAAATTAGCATCTGCTTTATGGTTTGCAGATATTGTAAAGTTGGAGGGTGAACAACGATCAAGTTACAAAATCACAAGTATGAATGAAATGACTTGAACTCGAAAGGAAAAGCGGGTGTAAAAAGAGATTATTTTTAGGGAAGAAGAGTATCCTAAGTAGCATTGTATTTTATTGATTTGTTTCTAATGGCATATTATTATTATTTATTTTTCAATTGTTATGTATTTTGACGGCGTTGAATAAGCTTTTATCTTTGCATTACTCAGACTATCGACGTCGAGGGTTTCATTACTAGTTTCTTTCATTGGTATAGGTATCAGAGGCTCTAGCAAATATTGAACCCCAATCACATTTGGTATCTTGTATTCCTTGTTCTATTATAAAAAGAACACGATATTTCGACTTACTAGGTTAAAGACAGGAGGATGTTATTTACACAAACGAAAGATAAGACGTTTTTCGGTGGTTTATTAATGACAGTGGTCAATATTGCTAACCGCAGTACATTTGAGTAGATAGGTGGCTTTGGTCAGAACTAGTGAACTTGAAGGCTACGGGAGCCATTATGAGAAAGTATGTGGTATAAAGGCTAATAGAATTTTTTGGAAAATGTACGTTTCTGTATGGAAATATATGGTCTTATTTTCAATGCTCAGTCTGGCCACAAAATACATATTTTTAGGGTTGTTTGTGGACGCGGTTTGTAGATCCGAATATTGTCTTTCGGTCATTTGGTTGACGATATGGTTAATGAAGAGAGGCAAATTTTGAAGGACAGGCTGTGACAGTGCTGGTACTGGACCGGATGGCTGTGCATTGCGACTCGTGGCTTTAGGGAATTGATACTGGCAATAACAAGGTGGCCCCTAAGGTACAATCATGTGTGAATGATAGAAAAGAATGGAAAGTGTGGATGATTTTTCTGGGTCTGAAGGTAGTATACTAAAGTTCGAGAGAATGTTAATGATCGGTCGGTAAAACCGGTGATACAGCAAAAGCGTGCTTGTTTCTACCATGAAATGTTTCTGTTCTACATGACGATAAACCTTGGAATAATGAGAGCTTCAGAATATACCGTAGAAACAACGTAACCAGGGTAACCTTATTTGCTTAGAAAATTGTAAATGTTATTTTGATAGAAATGGCCGGCAGCCGTGCCTGCTGGCTGTTGATGAAGATAGGTATGAGGTGCAAAGCATGGTGAGAAATAGTTTGCCTATATTTACTGAAATAGTGAAATTCACCTGCAAATAAGAGAGATCTTTCCAAACAGAACCCTGCGCCTTCCAAAATACACACAACTCCATGCATATTTTCTCTCCGTCAGCCTTCCTTTTTCTAAATTAGAGACTGATTAATGTTAAAGTTACTTGCAGAAATGCTTGTTGTTCTTTTTACTTTTCTCAATGGTTTATTCTGTCACATGGAATGTAATCGAACAAAAACGAAAAAGGGTTTTTACCATAAAAACTGTTTGATTGAACAGGAACATTCACTGTGAGACATTGGGTGTACTAAGTAGTTTTATTAATGTAGTTTGGTTATTATTTGCTTTGATATATTTGTACAAAAAGCATTTAAAGCAATTGAAAGCAATTCTTTActcctattcgagatttttacagacatggtaaatctagcgaatgaagtagttggatttagcttataaatataatctgttttatctatcgacttaccaccaggttattttttgctaatatttttaagctattatgaaaaacaattgttttgaactatccaaaatgtaacttcttttaagtattgtagattcgccgacgacaccaatgcttatttaaaaatcaataaaacagaacttagctttccattaatcgtaaaaatctccatccatccgtagtgttttactactgaaaaggtcaggatggctctttaccgttcatgaatgctttagcggaaaaactccatttcaaaccctgtctgtttccaaagcagccgtcagtgaacaacgcatgaggggactcgttcagttacacgcagtttgaaattggatttataaaaggtttggttcgtc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O02751	Craniofacial development protein 2 OS=Bos taurus OX=9913 GN=CFDP2 PE=1 SV=2
Q588U8	Craniofacial development protein 2 OS=Tragulus javanicus OX=9849 GN=CFDP2 PE=2 SV=1
Q9D4G9	RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF16099 all species →	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan
PF21000 all species →	RMI1_N_N	RMI1, N-terminal helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR044881 all species →	Homologous_superfamily	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR032199 all species →	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR049363 all species →	Domain	RMI1, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold540.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →