Gene detail

Detailed information of scaffold583.g1.t1 in Morbakka virulenta

Genomic Location: scaffold583:1...78905
NR annotation: XP_020917298.1, bifunctional glutamate/proline--tRNA ligase [Exaiptasia diaphana]
Species Morbakka virulenta · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold583.g1.t1

ATGTATTTGTTGCACATTGCAAAGGGGACGTTGGCTAAGGTATCGAATACACTTCGTCATTACACATCGCAGACAATAGGAGCGTCTTACAAGGCAGTATTGACGAGAAAATCGAGTAGAAATATGGTTCATGTTACAGCAAGTAGTAGCAACCCTCCACTTGCTGTTCTTCTTTCAGTTGAACATTTGAAAGAACTAAAAGAGGATGTGTCATTGGATTGGGGCAATGGTACCACAATAGAGAATGTGAATGTGACTGGTGATGCATCTGTTGCTAGATACCTTGCATCCACATTCAAGAACAGTGGACTCTATGGTTCTTCAATACTAGAAAGATCAGAGATTGACCATTGGTTGGATTTTAGTAACATTCATTTGAGAGCAACAGATGATGCCGAAGAAGCCCTTTTGTATGTGGACAAATTACTTGCACCAGTTGCACATTTTGTTGGACATTCATTCACTTTAGCAGATTTTGCAGTTTGGGGAGCATTCAAAACAAATCCAAAGCTTTTATCACAATTAAATACAGGAGGATGTGGAAAACACATATCCAGATGGTTTCATTATTGTTCAGCTCAGGACATTTTTTGTAAAGTTTCTGCAATGCTTCCACAAAATGAAAAGTCTAGTAATCAGAGTTCAAAAACAGCTAAGCAGAGTTCCAAGGGTCTAAAATCGTCAATGGAAGAAGGTGGAAAATTTATTGATCTCCCCGGTGGAGAAAATAGCGAAGTAGTAGTGAGGTTTCCACCAGAGGCAAGTGGTTATCTCCATATTGGACATGCAAAAGCAGCTTTATTGAATCAATTTTACAAAGAAAGATACAACGGAAAATTGATCATGAGATTTGATGATACAAATCCAGCAAAAGAGAACGCACATTTTGAAGATGGCTCATCAAAATCAAACGTACATATGGAATGGGACAAAATTTGGGCATTTAACAAGAAGGTAATAGATCCAATTGCTCCCAGATATACTGCATTGCTTGCCACGGATGCTGTTCCCGTCTTCATGAAAGGAGCCGAGGAATCATCGGCAGAATATCCCTTGCATCCAAAAAACACTACCGTTGGCACCAAGTGTGTTTATTATTCACGTGATGTGTACATTGATGGGGAAGATGCAAAGCTCCTTAAAGAAGGCGAAATAGCAACGTTTATCAACTGGGGAAACGCAAGCATAAATAACATCAATAGAATTTTTCTTATGGGATATGTAAACAATTCAGTGTTACATTCACTGATATTAGATTTCAAGAAAACGACTAACCTCACCTGGCTTTGTAAACATTCCAAAGGTCCTTTTGTGCCCACCCTTTGTGTTGATTTTGGCCATATCATCAACAAGGACATTATAACAAAAAACGATGACTTTAAAGATTATATAGCCAAGGACACACGTACTGAAGCATTAATGCATGGTGATCCAGAATTGTTGAAAGTTAAAAAAGGAGATATAATTCAGCTCCAAAGACGTGGGTTTTACATCTGCGACCAGCCATATGAAGCAGCCAGCCGTCACAGCGGTAGAGAAACCCCGTGTATTCTCTTCAGCATTCCTGATGGTCACGTGAAATCTCAAGCAACAACAGACAAAGGAAGAAAATCCAACAGTGCACAAAAAAGTGGAATAAAAGAGAAAAAGGGAAAGGGAACAGAGCAGAAAAGAGGTATATGTACAGATGCTACTAAACAGAAAGAAGACAGTAACGGAGGAGAAGCTGGAAAGATAACAGAGGACGTAGCTGCTCTGATAGAGAAAATAACAGCACAAGGAAACAAAGTGAGAGAGTTAAAGAAATCTGGTTCTGACAAGGACACTGTCGGCAAAGAATTAGCTGTATTGTTTAAGCTGAAAGAAGAATATTTGAATACAACCGGAATAGAATACAAGCCAGCCACAGGAGGATCGGCACATTCCAAAAACAAAGGTAAAGAATCAAAAAAAAAGACTGAGCAGGTGAAAAAAGAGATGTCTCATCCAGTCGATGCAAATGCTTTAAGTCCAGAAGCTACGAAGTTAATGGAAGAAATTTCTGAGCAAGGAAATAAAGTAAGAGAGCTTAAATCTACAGGAGGAAGCAAAGATGATATCGACGCGGAAGTAAAGAAACTTATTGATCTTAAAGCAAAGTATAAAGATCTAACAGGTTCAGATGTGCCGCGCACAGATCAAGGCAGAAAAGAGAAAGGTGGAAAGAAAAAGGAAGGAGTAAAGGAATCAGAAAAGAAGATTGAAAAACAACAACCTGTAGCTAAGGATGCTTCAGCTGAAGGAGGGCAGAAAAAAGTTACAAGTGACAACTCATACATTTTATCAGTCAATATTGGCGATACAGATACGGTGATCACGAAAGCTGAAATGATTGAATACTACGATGTCAGTGGATGTTATATCCTTCGTCCCTGGTCTTACAGTATCTGGGAAAAAATACACGATTTCTTTGATGCAGAAATTAAAAAATTGGGAGTAGAAAATTGCTATTTTCCAATGTTTGTCTCGAAGCAAGCATTAGAAAAAGAGAAAACGCATATAGCAGATTTTGCGCCTGAGGTTGCATGGGTAACAAAATCTGGAAACACTGACCTCCAAGAACCAATTGCTGTGAGGCCTACTAGCGAAACAGTTATGTACCCTACTTATGCAAAGTGGTGCCAGTCGCATCGAGATTTACCCATTAAACTAAACCAGTGGTGTAATATTGTGCGTTGGGAGTTCAAACACCCTCAACCATTTCTTCGAACACGTGAATTTCTCTGGCAAGAGGGTCACACTGCCTTTGCTACAAGAGAGGAAGCATGTGAAGAGGTTTACAAAATCTTAGACCTTTACGCACAAGTGTATACTGATTTATTGGCCATTCCAGTAATCAAAGGTAGGAAAACAGAAAAAGAGAAGTTTGCAGGTGGCGACTTTACTACAACATGTGAAGCATATGTAGAAGCTAGCGGAAGAGCTATACAGGGTGCTACGTCCCATCATTTGGGTGAAAATTTCTCGAAAATGTTTGACATAGTATTCGAAGATCCAAGTAAACCAGATTCAAAAGAAAAGCTAAATGTGCATCAGAATTCATGGGGTATTACAACAAGAACAATTGGAGTCATGACAATGGTGCATGGAGATAATCAAGGTGTTGTTTTACCACCGAATGGTGCAAATGTCCAGGCTATCATCATTCCTTGCGGCATCACTGCATCACTTACGGAAGACAAGAAACAGGCTGTCATCAAAACATGTAAAGACTTTGAAAAGCAATTACTTGGGCTAGGTGTTCGTGCACGAGGTGATTACAGAGACAATTATTCGCCAGGATGGAAGTTCAACCATTGGGAACTCAAGGGTGTTCCGATCAGGATTGAAATAGGACCACGAGATGTAGAAAAAAATCAGTTTGTTGCGGTTCGAAGAGACACCATGGAAAAG

Transcript

scaffold583.g1.t1

CTTGAAAAAAAAGTCTTGCATCAGGTCAAACGCTGTATGTATTTGTTGCACATTGCAAAGGGGACGTTGGCTAAGGTATCGAATACACTTCGTCATTACACATCGCAGACAATAGGAGCGTCTTACAAGGCAGTATTGACGAGAAAATCGAGTAGAAATATGGTTCATGTTACAGCAAGTAGTAGCAACCCTCCACTTGCTGTTCTTCTTTCAGTTGAACATTTGAAAGAACTAAAAGAGGATGTGTCATTGGATTGGGGCAATGGTACCACAATAGAGAATGTGAATGTGACTGGTGATGCATCTGTTGCTAGATACCTTGCATCCACATTCAAGAACAGTGGACTCTATGGTTCTTCAATACTAGAAAGATCAGAGATTGACCATTGGTTGGATTTTAGTAACATTCATTTGAGAGCAACAGATGATGCCGAAGAAGCCCTTTTGTATGTGGACAAATTACTTGCACCAGTTGCACATTTTGTTGGACATTCATTCACTTTAGCAGATTTTGCAGTTTGGGGAGCATTCAAAACAAATCCAAAGCTTTTATCACAATTAAATACAGGAGGATGTGGAAAACACATATCCAGATGGTTTCATTATTGTTCAGCTCAGGACATTTTTTGTAAAGTTTCTGCAATGCTTCCACAAAATGAAAAGTCTAGTAATCAGAGTTCAAAAACAGCTAAGCAGAGTTCCAAGGGTCTAAAATCGTCAATGGAAGAAGGTGGAAAATTTATTGATCTCCCCGGTGGAGAAAATAGCGAAGTAGTAGTGAGGTTTCCACCAGAGGCAAGTGGTTATCTCCATATTGGACATGCAAAAGCAGCTTTATTGAATCAATTTTACAAAGAAAGATACAACGGAAAATTGATCATGAGATTTGATGATACAAATCCAGCAAAAGAGAACGCACATTTTGAAGATGGCTCATCAAAATCAAACGTACATATGGAATGGGACAAAATTTGGGCATTTAACAAGAAGGTAATAGATCCAATTGCTCCCAGATATACTGCATTGCTTGCCACGGATGCTGTTCCCGTCTTCATGAAAGGAGCCGAGGAATCATCGGCAGAATATCCCTTGCATCCAAAAAACACTACCGTTGGCACCAAGTGTGTTTATTATTCACGTGATGTGTACATTGATGGGGAAGATGCAAAGCTCCTTAAAGAAGGCGAAATAGCAACGTTTATCAACTGGGGAAACGCAAGCATAAATAACATCAATAGAATTTTTCTTATGGGATATGTAAACAATTCAGTGTTACATTCACTGATATTAGATTTCAAGAAAACGACTAACCTCACCTGGCTTTGTAAACATTCCAAAGGTCCTTTTGTGCCCACCCTTTGTGTTGATTTTGGCCATATCATCAACAAGGACATTATAACAAAAAACGATGACTTTAAAGATTATATAGCCAAGGACACACGTACTGAAGCATTAATGCATGGTGATCCAGAATTGTTGAAAGTTAAAAAAGGAGATATAATTCAGCTCCAAAGACGTGGGTTTTACATCTGCGACCAGCCATATGAAGCAGCCAGCCGTCACAGCGGTAGAGAAACCCCGTGTATTCTCTTCAGCATTCCTGATGGTCACGTGAAATCTCAAGCAACAACAGACAAAGGAAGAAAATCCAACAGTGCACAAAAAAGTGGAATAAAAGAGAAAAAGGGAAAGGGAACAGAGCAGAAAAGAGGTATATGTACAGATGCTACTAAACAGAAAGAAGACAGTAACGGAGGAGAAGCTGGAAAGATAACAGAGGACGTAGCTGCTCTGATAGAGAAAATAACAGCACAAGGAAACAAAGTGAGAGAGTTAAAGAAATCTGGTTCTGACAAGGACACTGTCGGCAAAGAATTAGCTGTATTGTTTAAGCTGAAAGAAGAATATTTGAATACAACCGGAATAGAATACAAGCCAGCCACAGGAGGATCGGCACATTCCAAAAACAAAGGTAAAGAATCAAAAAAAAAGACTGAGCAGGTGAAAAAAGAGATGTCTCATCCAGTCGATGCAAATGCTTTAAGTCCAGAAGCTACGAAGTTAATGGAAGAAATTTCTGAGCAAGGAAATAAAGTAAGAGAGCTTAAATCTACAGGAGGAAGCAAAGATGATATCGACGCGGAAGTAAAGAAACTTATTGATCTTAAAGCAAAGTATAAAGATCTAACAGGTTCAGATGTGCCGCGCACAGATCAAGGCAGAAAAGAGAAAGGTGGAAAGAAAAAGGAAGGAGTAAAGGAATCAGAAAAGAAGATTGAAAAACAACAACCTGTAGCTAAGGATGCTTCAGCTGAAGGAGGGCAGAAAAAAGTTACAAGTGACAACTCATACATTTTATCAGTCAATATTGGCGATACAGATACGGTGATCACGAAAGCTGAAATGATTGAATACTACGATGTCAGTGGATGTTATATCCTTCGTCCCTGGTCTTACAGTATCTGGGAAAAAATACACGATTTCTTTGATGCAGAAATTAAAAAATTGGGAGTAGAAAATTGCTATTTTCCAATGTTTGTCTCGAAGCAAGCATTAGAAAAAGAGAAAACGCATATAGCAGATTTTGCGCCTGAGGTTGCATGGGTAACAAAATCTGGAAACACTGACCTCCAAGAACCAATTGCTGTGAGGCCTACTAGCGAAACAGTTATGTACCCTACTTATGCAAAGTGGTGCCAGTCGCATCGAGATTTACCCATTAAACTAAACCAGTGGTGTAATATTGTGCGTTGGGAGTTCAAACACCCTCAACCATTTCTTCGAACACGTGAATTTCTCTGGCAAGAGGGTCACACTGCCTTTGCTACAAGAGAGGAAGCATGTGAAGAGGTTTACAAAATCTTAGACCTTTACGCACAAGTGTATACTGATTTATTGGCCATTCCAGTAATCAAAGGTAGGAAAACAGAAAAAGAGAAGTTTGCAGGTGGCGACTTTACTACAACATGTGAAGCATATGTAGAAGCTAGCGGAAGAGCTATACAGGGTGCTACGTCCCATCATTTGGGTGAAAATTTCTCGAAAATGTTTGACATAGTATTCGAAGATCCAAGTAAACCAGATTCAAAAGAAAAGCTAAATGTGCATCAGAATTCATGGGGTATTACAACAAGAACAATTGGAGTCATGACAATGGTGCATGGAGATAATCAAGGTGTTGTTTTACCACCGAATGGTGCAAATGTCCAGGCTATCATCATTCCTTGCGGCATCACTGCATCACTTACGGAAGACAAGAAACAGGCTGTCATCAAAACATGTAAAGACTTTGAAAAGCAATTACTTGGGCTAGGTGTTCGTGCACGAGGTGATTACAGAGACAATTATTCGCCAGGATGGAAGTTCAACCATTGGGAACTCAAGGGTGTTCCGATCAGGATTGAAATAGGACCACGAGATGTAGAAAAAAATCAGTTTGTTGCGGTTCGAAGAGACACCATGGAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07814	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens OX=9606 GN=EPRS1 PE=1 SV=5
Q8CGC7	Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus OX=10090 GN=Eprs1 PE=1 SV=4
Q7SIA2	Bifunctional glutamate/proline--tRNA ligase OS=Cricetulus griseus OX=10029 GN=EPRS1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003095 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF03950 all species →	tRNA-synt_1c_C	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF00749 all species →	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan
PF00458 all species →	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan
PF20974 all species →	tRNA-synt_1c_C2	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011035 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR020059 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002316 all species →	Family	Proline-tRNA ligase, class IIa	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR000738 all species →	Domain	WHEP-TRS domain	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR033721 all species →	Domain	Prolyl-tRNA synthetase, catalytic domain	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR020058 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR004499 all species →	Family	Proline-tRNA ligase, class IIa, archaeal-type	Interproscan
IPR049437 all species →	Domain	tRNA synthetases class I (E and Q), anti-codon binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43382 all species →	PROLYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004827 all species →	Molecular Function	proline-tRNA ligase activity	Interproscan
GO:0006433 all species →	Biological Process	prolyl-tRNA aminoacylation	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold583.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →