Detailed information of scaffold62.g45.t1 in Morbakka virulenta

Genomic Location: scaffold62:1930181...1941072
NR annotation: KAG5368137.1, Mevalonate kinase [Yarrowia sp. E02]
Species Morbakka virulenta · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q03426Mevalonate kinase OS=Homo sapiens OX=9606 GN=MVK PE=1 SV=1
B6YST1Mevalonate kinase OS=Thermococcus onnurineus (strain NA1) OX=523850 GN=mvk PE=3 SV=1
Q5JJC6Mevalonate kinase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=mvk PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004699 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10509
all species →
GalKase_gal_bdgGalactokinase galactose-binding signatureDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014721
all species →
Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR020568
all species →
Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR019539
all species →
DomainGalactokinase, N-terminal domainInterproscan
IPR006205
all species →
FamilyMevalonate kinaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43290
all species →
MEVALONATE KINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004496
all species →
Molecular Functionmevalonate kinase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0008299
all species →
Biological Processisoprenoid biosynthetic processInterproscan
GO:0019287
all species →
Biological Processisopentenyl diphosphate biosynthetic process, mevalonate pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for scaffold62.g45.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Morbakka virulenta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Morbakka virulenta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP