Gene detail

Detailed information of scaffold76.g12.t1 in Morbakka virulenta

Genomic Location: scaffold76:266005...323105
NR annotation: XP_028392893.1, fibrinogen beta chain-like [Dendronephthya gigantea]
Species abbreviation MVIRU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold76.g12.t1

ATGATTCCATATCAAAGACTTCGATTGCTAAAATTGCTTGTTTTATTTTGTGTAAGTTTCAGAACTTTAGTTTACGGAGGAGATTTTACGGTCAATGAGAATTATAAGGATAAATCAAGAGCAGGTTTGTTCTCAGCAATGGATGCAAGACCCCCCGAAGCATCCGAAAGAGTCATTGGTGGATTGCCAGCAACAAACCATCAATTTCCTTGGATTGTCTATTTTCATGCAATATCAAGACGACCTAATGGAACAATAACAAACTTCTGCGGGGGCTCTCTAATCCACTCAAGATGGATATTAACAGCAGCTCATTGCCTACCAGAAGGAGAAAGTACGTCAAAAGTGGTTGCTTATATTGGGAATATTTACTCCCATATCAACAAAAGAAAAACAACAGAAAAAATAAGAGTAAAGGCAATATTTATCCACCCTAATTATGCAGGAAATGGCTTTAAAGGTGCCGATATAGCTTTGCTGTACCTATCAAAACCATCAAAGCACAGAACCATTCGACCTGCTATGACTCCTGCGGATGATGTGTGGATGAAACCTTTTACGCATGCAACAGTTGCTGGGTGGGGATCAACGTCACCTCATTCGAAACATTTATCGCCATTATTGAGATATGCAAATGTACAGATAATACCACGTGACAAATGCAATCGCCGATCATCATACAATGGCTCTATTTTACCCGACATGATGTGTGCAGCGGGCCGCAGTCGAGACGCTTGTTATAGTGACAGTGGGGGCCCATTAATGGTTAAGTCATCTTGCAGTTCTGTTTCGGAGTGGGTCTTAATTGGAGTTGTTTCTTGGGGTAGAGGATGTGCGCACGCGAACTACCCAGGTGTTTACGTGAAAGTCGCATTGTACGCTGATTGGATATACGACATGATTAATCCAGGAAAACGGATATACAAATATTTCAAATATTGCTGTTGTCAGTCAAAGGAGCCACTTCGTCTGAGAAGCAAGCAGCAACGAAGAAGGTCGAGAGTTACTCCTCCAAATAGCAACAACCGCTATATTGCTATTCAAGGACCCCCTGGCCCTCCTGGTCCTCCTGGCCCATCCGGGCCTACTGGATTGACAGGAATGACTGGTTTGGACGGACAAAGAGGACCAAGGGGCCCTGCTGGACCTGTGGGCCCGCCAGGTAAACCAGGGCCTCGTGGAAGTGTGGGATCTACTGGAAGACCTGGATTGCCTGGACCACCAGGAAGACTGATTGCGGTAGATGGAGTGGCCTTCCCAACTTTTGAAGAAATGAAAGACCTGACAAATGAACTAAAGAGGTTGGAATCAAAGATAAGTGGTCTACTTGCAGAAACAAGATTAGGACGGACATCTGAGTATGCAGCAGGAACCTGTAAGGAGATCCTTGACTCAACGGAGGGACTTAAACAGTCAGGCAGATACTGGCTATCACCAGGAAAAGCAGCCGATACTGCTTTTATCGGATATTGTAACATGGAGATTGAAGGAGGAGGTTGGACCTTAATGTACTCGTATACATTTACTAATTACAAAAACTTCCGATCTGCAGAAAATGCTGTAAATCCCGTGCCAAACTGGAGTAACGTACTTAGAGAAAGAGTATCAACAACACCTCCTCAGGGCCTTCGTGACTATGGAGCAGTAGACATCAAACATTGGCATCTATTTGGCAAAGAAATGCTCGTGGTCTCTAATATCAATGACTGGATAATATGCAAACCAAAAAGAGAAGTGAAAACGTTATTTGTTTCCCCTGAAAATCGGGACGGACCTCTTCTGTACAATTTGCAATGCAAAAATATCAGGGACACAACACAAAGGTGTGACCCGCAGGTACCCGACACACTGCTTTGGACTGACTATGGTCCTTCACTGATTATAAAAAATCGAGGTATTGTACGGGGAACGTATTACAACTGGGACAGTTCGTCTGTAGAGAGTTGGCCAGTACATGACCCCTGTGGTTCATCACGGAAAAGCAATAATAGAGACGTCAGTGAACCATACGGTGCAATATTTGTTCGCTGA

Transcript

scaffold76.g12.t1

GTGAAATCAAAGACTCCCTCTCTTGTCTTATGGATCGATAATCGATGTGTTTAAGCTAACTTAAAATGTTTTCTAGCCAATGCTTTTCAATTAACAATACTCAAAAGATTTTCTGTTGACTTAACTTTAGTTTAAATCAGCAATCGTTCAAAAGATTCAGTAAGGCAAAGATCTGTGAAGAAAGTAAAAGCAACTTCAAGAACAAAACTTCAGCGAGATGATTCCATATCAAAGACTTCGATTGCTAAAATTGCTTGTTTTATTTTGTGTAAGTTTCAGAACTTTAGTTTACGGAGGAGATTTTACGGTCAATGAGAATTATAAGGATAAATCAAGAGCAGGTTTGTTCTCAGCAATGGATGCAAGACCCCCCGAAGCATCCGAAAGAGTCATTGGTGGATTGCCAGCAACAAACCATCAATTTCCTTGGATTGTCTATTTTCATGCAATATCAAGACGACCTAATGGAACAATAACAAACTTCTGCGGGGGCTCTCTAATCCACTCAAGATGGATATTAACAGCAGCTCATTGCCTACCAGAAGGAGAAAGTACGTCAAAAGTGGTTGCTTATATTGGGAATATTTACTCCCATATCAACAAAAGAAAAACAACAGAAAAAATAAGAGTAAAGGCAATATTTATCCACCCTAATTATGCAGGAAATGGCTTTAAAGGTGCCGATATAGCTTTGCTGTACCTATCAAAACCATCAAAGCACAGAACCATTCGACCTGCTATGACTCCTGCGGATGATGTGTGGATGAAACCTTTTACGCATGCAACAGTTGCTGGGTGGGGATCAACGTCACCTCATTCGAAACATTTATCGCCATTATTGAGATATGCAAATGTACAGATAATACCACGTGACAAATGCAATCGCCGATCATCATACAATGGCTCTATTTTACCCGACATGATGTGTGCAGCGGGCCGCAGTCGAGACGCTTGTTATAGTGACAGTGGGGGCCCATTAATGGTTAAGTCATCTTGCAGTTCTGTTTCGGAGTGGGTCTTAATTGGAGTTGTTTCTTGGGGTAGAGGATGTGCGCACGCGAACTACCCAGGTGTTTACGTGAAAGTCGCATTGTACGCTGATTGGATATACGACATGATTAATCCAGGAAAACGGATATACAAATATTTCAAATATTGCTGTTGTCAGTCAAAGGAGCCACTTCGTCTGAGAAGCAAGCAGCAACGAAGAAGGTCGAGAGTTACTCCTCCAAATAGCAACAACCGCTATATTGCTATTCAAGGACCCCCTGGCCCTCCTGGTCCTCCTGGCCCATCCGGGCCTACTGGATTGACAGGAATGACTGGTTTGGACGGACAAAGAGGACCAAGGGGCCCTGCTGGACCTGTGGGCCCGCCAGGTAAACCAGGGCCTCGTGGAAGTGTGGGATCTACTGGAAGACCTGGATTGCCTGGACCACCAGGAAGACTGATTGCGGTAGATGGAGTGGCCTTCCCAACTTTTGAAGAAATGAAAGACCTGACAAATGAACTAAAGAGGTTGGAATCAAAGATAAGTGGTCTACTTGCAGAAACAAGATTAGGACGGACATCTGAGTATGCAGCAGGAACCTGTAAGGAGATCCTTGACTCAACGGAGGGACTTAAACAGTCAGGCAGATACTGGCTATCACCAGGAAAAGCAGCCGATACTGCTTTTATCGGATATTGTAACATGGAGATTGAAGGAGGAGGTTGGACCTTAATGTACTCGTATACATTTACTAATTACAAAAACTTCCGATCTGCAGAAAATGCTGTAAATCCCGTGCCAAACTGGAGTAACGTACTTAGAGAAAGAGTATCAACAACACCTCCTCAGGGCCTTCGTGACTATGGAGCAGTAGACATCAAACATTGGCATCTATTTGGCAAAGAAATGCTCGTGGTCTCTAATATCAATGACTGGATAATATGCAAACCAAAAAGAGAAGTGAAAACGTTATTTGTTTCCCCTGAAAATCGGGACGGACCTCTTCTGTACAATTTGCAATGCAAAAATATCAGGGACACAACACAAAGGTGTGACCCGCAGGTACCCGACACACTGCTTTGGACTGACTATGGTCCTTCACTGATTATAAAAAATCGAGGTATTGTACGGGGAACGTATTACAACTGGGACAGTTCGTCTGTAGAGAGTTGGCCAGTACATGACCCCTGTGGTTCATCACGGAAAAGCAATAATAGAGACGTCAGTGAACCATACGGTGCAATATTTGTTCGCTGAAGTTTGTCACGTGCCATGTGAATACAAGCCAGAAGCCTGGGGTCAATTCAGAAAAAGACCAACTTTGAGCAACATTATTGGATAATTGTGATGTTGTTGTTCCAGCTTATAAATTGTAGGACTGCATTATAATGGCAATTGGCTTTTTCCTGTGTTGCTCCATAAAGAATAGAAATGACATTTTCAAATGCATTTTGTTGTGACAAGTGACTCTGGGTATTAAACTTGATTTGCATCATCCGGCATATTATTTTTATGAAACAGAACGAAAAGGTTGAATTTTGGCCCGTATTTTCAACTGAGAATGACACCATATGTTTACTTTCCGTTGATCGGACAAAGAAAATGGCAAATTGTACACATCTTTCTATTTGTTGGCGTTTTTTGGAATGTTTAATAAGACGTAAATTGAATTGCGTTACAAACAGCATGCACACTACTGTATAGAGGAAAGAATATATTTTTTAATTATTTCCTATTGTTATGTTAAATTTTAGAGAGAGAGTATTGTTCTTACTACTTTAGAATGTGCTATTGTACCCAACGTTTGGGTCTTGATGTTATTATTTCTAGCTAGAAAACTGTCTCACATGACAATCCAAATTAATTTTCTGGCGCATGCGAGATGGGCTTTTCAAAAGTCATTGTTTAGCCAAAATACTGTAAATCGCCAGCTTGTCATCTGGCTATATTTTGTATATAGATTAAAAAGTGCAGTATTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GZN4	Brain-specific serine protease 4 OS=Homo sapiens OX=9606 GN=PRSS22 PE=1 SV=1
Q99MS4	Serine protease 29 OS=Mus musculus OX=10090 GN=Prss29 PE=1 SV=2
Q9N2D1	Tryptase OS=Sus scrofa OX=9823 GN=MCT7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24253 all species →	TRANSMEMBRANE PROTEASE SERINE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold76.g12.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.