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Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g10220 | XP_031549447.1 | short stature homeobox protein-like [Actinia tenebrosa] | O35750 Short stature homeobox protein 2 (Fragment) OS=Rattus norveg | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g10237 | XP_020908016.1 | retinal homeobox protein Rx1 isoform X1 [Exaiptasia diaphana] | Q96QS3 Homeobox protein ARX OS=Homo sapiens OX=9606 GN=ARX PE=1 SV= | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g10301 | XP_020913514.1 | retinal homeobox protein Rx1 isoform X1 [Exaiptasia diaphana] | Q06453 Homeobox protein aristaless OS=Drosophila melanogaster OX=72 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g12585 | XP_020906663.1 | paired mesoderm homeobox protein 2 [Exaiptasia diaphana] | O42356 Retinal homeobox protein Rx1 OS=Danio rerio OX=7955 GN=rx1 P | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g14529 | XP_020909347.1 | homeobox protein prophet of Pit-1 [Exaiptasia diaphana] | P06601 Segmentation protein paired OS=Drosophila melanogaster OX=72 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g15825 | XP_020911359.1 | visual system homeobox 2 [Exaiptasia diaphana] | Q9IAL1 Visual system homeobox 2 OS=Gallus gallus OX=9031 GN=VSX2 PE | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g18659 | XP_033109858.1 | homeobox protein aristaless-like 4 isoform X2 [Anneissia japonica] | Q4LAL6 Homeobox protein aristaless-like 4 OS=Bos taurus OX=9913 GN= | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g3100 | XP_020914417.1 | retinal homeobox protein Rx1 [Exaiptasia diaphana] | – | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g3101 | XP_031560467.1 | retinal homeobox protein Rx1-like [Actinia tenebrosa] | O97039 Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g3446 | XP_020917654.1 | paired box protein Pax-3 [Exaiptasia diaphana] | P47239 Paired box protein Pax-7 OS=Mus musculus OX=10090 GN=Pax7 PE | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g6781 | XP_020905781.1 | ALX homeobox protein 1 [Exaiptasia diaphana] | Q06453 Homeobox protein aristaless OS=Drosophila melanogaster OX=72 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g9706 | XP_020908694.1 | uncharacterized serine-rich protein C215.13 [Exaiptasia diaphana] | O08934 Homeobox protein unc-4 homolog OS=Mus musculus OX=10090 GN=U | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g9707 | XP_020908696.1 | ALX homeobox protein 1 [Exaiptasia diaphana] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
