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This orthogroup contains 6,131 genes from 149 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene00144.t1 | XP_020911083.1 | homeobox protein EMX1 [Exaiptasia diaphana] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Actinoscyphia liui | gene00145.t1 | XP_031564399.1 | retinal homeobox protein Rx2-like [Actinia tenebrosa] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Actinoscyphia liui | gene06003.t1 | XP_020917496.1 | GS homeobox 1 [Exaiptasia diaphana] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Actinoscyphia liui | gene06004.t1 | XP_020917531.1 | homeobox protein Hox-A5a [Exaiptasia diaphana] | P24341 Homeobox protein Hox-D10 (Fragment) OS=Gallus gallus OX=9031 | JBrowse |
| Actinoscyphia liui | gene06012.t1 | XP_020917512.1 | pancreas/duodenum homeobox protein 1 [Exaiptasia diaphana] | P10178 Homeobox protein HB3 (Fragment) OS=Tripneustes gratilla OX=7 | JBrowse |
| Actinoscyphia liui | gene10111.t1 | XP_020897531.1 | homeobox protein vent1B [Exaiptasia diaphana] | Q9BZE3 BarH-like 1 homeobox protein OS=Homo sapiens OX=9606 GN=BARH | JBrowse |
| Actinoscyphia liui | gene10112.t1 | XP_020897531.1 | homeobox protein vent1B [Exaiptasia diaphana] | Q9BZE3 BarH-like 1 homeobox protein OS=Homo sapiens OX=9606 GN=BARH | JBrowse |
| Actinoscyphia liui | gene11171.t1 | XP_031551059.1 | homeobox protein ceh-13-like [Actinia tenebrosa] | P10178 Homeobox protein HB3 (Fragment) OS=Tripneustes gratilla OX=7 | JBrowse |
| Actinoscyphia liui | gene11171.t2 | XP_031551059.1 | homeobox protein ceh-13-like [Actinia tenebrosa] | – | JBrowse |
| Actinoscyphia liui | gene11529.t1 | XP_020896154.1 | brain-specific homeobox protein homolog [Exaiptasia diaphana] | O43711 T-cell leukemia homeobox protein 3 OS=Homo sapiens OX=9606 G | JBrowse |
| Actinoscyphia liui | gene11531.t1 | XP_020917364.1 | homeobox protein unplugged [Exaiptasia diaphana] | Q14549 Homeobox protein GBX-1 OS=Homo sapiens OX=9606 GN=GBX1 PE=1 | JBrowse |
| Actinoscyphia liui | gene11533.t1 | XP_031559406.1 | homeobox protein engrailed-1-B-like isoform X2 [Actinia tenebrosa] | P26797 Homeobox protein ceh-19 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Actinoscyphia liui | gene11679.t1 | XP_020895089.1 | homeobox protein MOX-2 [Exaiptasia diaphana] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Actinoscyphia liui | gene11679.t2 | XP_020895089.1 | homeobox protein MOX-2 [Exaiptasia diaphana] | – | JBrowse |
| Actinoscyphia liui | gene11680.t1 | XP_020895097.1 | homeobox protein MOX-1 [Exaiptasia diaphana] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Actinoscyphia liui | gene11681.t1 | XP_020895074.1 | homeobox protein Hox-A3 [Exaiptasia diaphana] | P32442 Homeobox protein MOX-1 OS=Mus musculus OX=10090 GN=Meox1 PE= | JBrowse |
| Actinoscyphia liui | gene11682.t1 | XP_020895075.1 | homeobox protein Hox-B4 [Exaiptasia diaphana] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Actinoscyphia liui | gene11718.t1 | XP_031549831.1 | homeobox protein engrailed-like ceh-16 [Actinia tenebrosa] | Q9BZE3 BarH-like 1 homeobox protein OS=Homo sapiens OX=9606 GN=BARH | JBrowse |
| Actinoscyphia liui | gene11983.t1 | KXJ28028.1 | Homeobox protein not2 [Exaiptasia diaphana] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Actinoscyphia liui | gene12413.t1 | XP_020898724.1 | homeobox protein Hox-B4a [Exaiptasia diaphana] | P50219 Motor neuron and pancreas homeobox protein 1 OS=Homo sapiens | JBrowse |
