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Support counts the member genes carrying the term. % of genes is that count over all 2,234 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF01410 | COLFI — Fibrillar collagen C-terminal domain | 1918 / 2,234 | 85.9% | 94.4% of 2,032 | ≥80% support |
| GO | GO:0005201 Molecular Function | extracellular matrix structural constituent | 1932 / 2,234 | 86.5% | 96.1% of 2,010 | ≥80% support |
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 1668 / 2,234 | 74.7% | 94.7% of 1,762 | ≥50% support |
| Pfam | PF01391 | Collagen | 1660 / 2,234 | 74.3% | 81.7% of 2,032 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 1669 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 1668 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene11197.t1 | XP_020917447.2 | collagen alpha chain [Exaiptasia diaphana] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Actinoscyphia liui | gene11487.t1 | XP_028519665.1 | collagen alpha-1(I) chain [Exaiptasia diaphana] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Actinoscyphia liui | gene11500.t1 | XP_031559125.1 | collagen alpha-1(I) chain-like [Actinia tenebrosa] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Actinoscyphia liui | gene12207.t1 | XP_020917657.1 | collagen alpha-1(II) chain [Exaiptasia diaphana] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Actinoscyphia liui | gene12415.t1 | KXJ15297.1 | Collagen alpha-1(IV) chain [Exaiptasia diaphana] | P02452 Collagen alpha-1(I) chain OS=Homo sapiens OX=9606 GN=COL1A1 | JBrowse |
| Actinoscyphia liui | gene14767.t1 | XP_020915832.1 | collagen alpha-3(V) chain [Exaiptasia diaphana] | P02457 Collagen alpha-1(I) chain OS=Gallus gallus OX=9031 GN=COL1A1 | JBrowse |
| Actinoscyphia liui | gene14768.t1 | XP_028519061.1 | collagen alpha-1(I) chain isoform X2 [Exaiptasia diaphana] | P25940 Collagen alpha-3(V) chain OS=Homo sapiens OX=9606 GN=COL5A3 | JBrowse |
| Actinoscyphia liui | gene15122.t1 | XP_020906601.1 | collagen alpha-1(I) chain [Exaiptasia diaphana] | P20908 Collagen alpha-1(V) chain OS=Homo sapiens OX=9606 GN=COL5A1 | JBrowse |
