← Back to the gene family browser
This orthogroup contains 1,688 genes from 149 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,688 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10270 | SOX TRANSCRIPTION FACTOR | 1513 / 1,688 | 89.6% | 99.6% of 1,519 | ≥80% support |
| Pfam | PF00505 | HMG_box — HMG (high mobility group) box | 1518 / 1,688 | 89.9% | 100.0% of 1,518 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1333 / 1,688 | 79.0% | 99.7% of 1,337 | ≥50% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1333 / 1,688 | 79.0% | 99.7% of 1,337 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1329 / 1,688 | 78.7% | 99.4% of 1,337 | ≥50% support |
| GO | GO:0009653 Biological Process | anatomical structure morphogenesis | 1329 / 1,688 | 78.7% | 99.4% of 1,337 | ≥50% support |
| GO | GO:0030154 Biological Process | cell differentiation | 1329 / 1,688 | 78.7% | 99.4% of 1,337 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene00208.t1 | XP_020897578.1 | transcription factor sox-2 [Exaiptasia diaphana] | Q20201 Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 | JBrowse |
| Actinoscyphia liui | gene02603.t1 | XP_020915552.1 | transcription factor Sox-21-B [Exaiptasia diaphana] | Q21305 Transcription factor sox-2 OS=Caenorhabditis elegans OX=6239 | JBrowse |
| Actinoscyphia liui | gene05420.t1 | XP_020913998.1 | transcription factor SOX-14 [Exaiptasia diaphana] | Q32PP9 Transcription factor Sox-14 OS=Danio rerio OX=7955 GN=sox14 | JBrowse |
| Actinoscyphia liui | gene06241.t1 | XP_020914867.1 | transcription factor SOX-12-like [Exaiptasia diaphana] | Q06831 Transcription factor SOX-4 OS=Mus musculus OX=10090 GN=Sox4 | JBrowse |
| Actinoscyphia liui | gene06846.t1 | XP_020902895.1 | transcription factor Sox-7 [Exaiptasia diaphana] | O42342 Transcription factor Sox-7 OS=Xenopus laevis OX=8355 GN=sox7 | JBrowse |
| Actinoscyphia liui | gene06846.t2 | XP_020902895.1 | transcription factor Sox-7 [Exaiptasia diaphana] | O42342 Transcription factor Sox-7 OS=Xenopus laevis OX=8355 GN=sox7 | JBrowse |
| Actinoscyphia liui | gene06846.t3 | XP_020902895.1 | transcription factor Sox-7 [Exaiptasia diaphana] | – | JBrowse |
| Actinoscyphia liui | gene15622.t1 | XP_020903602.1 | transcription factor Sox-14 [Exaiptasia diaphana] | Q9W7R6 Transcription factor SOX-14 OS=Gallus gallus OX=9031 GN=SOX1 | JBrowse |
| Actinoscyphia liui | gene15642.t1 | XP_020903600.1 | transcription factor Sox-3 [Exaiptasia diaphana] | O42569 Transcription factor Sox-2 OS=Xenopus laevis OX=8355 GN=sox2 | JBrowse |
| Actinoscyphia liui | gene19100.t1 | XP_031560202.1 | transcription factor Sox-21-B-like [Actinia tenebrosa] | Q811W0 Transcription factor SOX-21 OS=Mus musculus OX=10090 GN=Sox2 | JBrowse |
| Actinoscyphia liui | gene21304.t1 | XP_020894461.1 | SOX domain-containing protein dichaete [Exaiptasia diaphana] | Q32PP9 Transcription factor Sox-14 OS=Danio rerio OX=7955 GN=sox14 | JBrowse |
| Actinoscyphia liui | gene22413.t1 | XP_020893712.1 | sex-determining region Y protein [Exaiptasia diaphana] | Q20201 Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 | JBrowse |
