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This orthogroup contains 1,065 genes from 148 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,065 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12619 | RFX TRANSCRIPTION FACTOR FAMILY | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| Pfam | PF02257 | RFX_DNA_binding — RFX DNA-binding domain | 855 / 1,065 | 80.3% | 99.8% of 857 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 855 / 1,065 | 80.3% | 93.3% of 916 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 855 / 1,065 | 80.3% | 93.3% of 916 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene00209.t1 | KXJ16031.1 | Transcription factor RFX4 [Exaiptasia diaphana] | Q5RJA1 DNA-binding protein RFX6 OS=Danio rerio OX=7955 GN=rfx6 PE=2 | JBrowse |
| Actinoscyphia liui | gene15727.t1 | XP_031554706.1 | transcription factor RFX4-like isoform X1 [Actinia tenebrosa] | Q33E94 Transcription factor RFX4 OS=Homo sapiens OX=9606 GN=RFX4 PE | JBrowse |
| Actinoscyphia liui | gene15727.t2 | XP_031554706.1 | transcription factor RFX4-like isoform X1 [Actinia tenebrosa] | Q33E94 Transcription factor RFX4 OS=Homo sapiens OX=9606 GN=RFX4 PE | JBrowse |
| Actinoscyphia liui | gene15727.t3 | XP_028515769.1 | transcription factor RFX4 isoform X3 [Exaiptasia diaphana] | Q33E94 Transcription factor RFX4 OS=Homo sapiens OX=9606 GN=RFX4 PE | JBrowse |
