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This orthogroup contains 397 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 397 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00313 | CSD — 'Cold-shock' DNA-binding domain | 349 / 397 | 87.9% | 99.4% of 351 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 359 / 397 | 90.4% | 100.0% of 359 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 335 / 397 | 84.4% | 93.3% of 359 | ≥80% support |
| PANTHER | PTHR11544 | COLD SHOCK DOMAIN CONTAINING PROTEINS | 245 / 397 | 61.7% | 68.3% of 359 | ≥50% support |
| GO | GO:0010468 Biological Process | regulation of gene expression | 236 / 397 | 59.5% | 65.7% of 359 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene27202.t1 | XP_031567855.1 | Y-box-binding protein 1-like [Actinia tenebrosa] | P41824 Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV= | JBrowse |
| Actinoscyphia liui | gene29637.t1 | MCG8642381.1 | cold-shock protein [Desulfobacterales bacterium] | P72366 Cold shock-like protein CspA OS=Stigmatella aurantiaca (stra | JBrowse |
| Actinoscyphia liui | gene29638.t1 | WP_018963422.1 | MULTISPECIES: cold-shock protein [Coprothermobacter] | P63237 Cold shock-like protein CspE OS=Buchnera aphidicola subsp. A | JBrowse |
| Actinoscyphia liui | gene29638.t2 | EJD6609165.1 | transcription antiterminator/RNA stability regulator CspE [Providencia rettgeri] | P63237 Cold shock-like protein CspE OS=Buchnera aphidicola subsp. A | JBrowse |
| Actinoscyphia liui | gene29639.t1 | MCC6458612.1 | cold shock domain-containing protein [Caldilineaceae bacterium] | P63237 Cold shock-like protein CspE OS=Buchnera aphidicola subsp. A | JBrowse |
| Actinoscyphia liui | gene29640.t1 | MCA1605390.1 | cold-shock protein [Acidobacteriota bacterium] | P63237 Cold shock-like protein CspE OS=Buchnera aphidicola subsp. A | JBrowse |
| Actinoscyphia liui | gene29641.t1 | XP_020896672.1 | protein lin-28 [Exaiptasia diaphana] | Q94C69 Cold shock domain-containing protein 3 OS=Arabidopsis thalia | JBrowse |
