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This orthogroup contains 329 genes from 93 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 329 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 276 / 329 | 83.9% | 100.0% of 276 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 287 / 329 | 87.2% | 100.0% of 287 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 274 / 329 | 83.3% | 95.5% of 287 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 274 / 329 | 83.3% | 95.5% of 287 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 231 / 329 | 70.2% | 80.5% of 287 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 208 / 329 | 63.2% | 72.5% of 287 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 202 / 329 | 61.4% | 70.4% of 287 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene12729.t1 | XP_031559139.1 | retinal homeobox protein Rx-A-like [Actinia tenebrosa] | Q91685 Homeobox protein Mix.2 OS=Xenopus laevis OX=8355 GN=mix-b PE | JBrowse |
| Actinoscyphia liui | gene12793.t1 | XP_031559139.1 | retinal homeobox protein Rx-A-like [Actinia tenebrosa] | P53544 Homeobox protein goosecoid OS=Danio rerio OX=7955 GN=gsc PE= | JBrowse |
