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This orthogroup contains 216 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 216 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR44080 | E3 UBIQUITIN-PROTEIN LIGASE COP1 | 191 / 216 | 88.4% | 99.5% of 192 | ≥80% support |
| Pfam | PF00400 | WD40 — WD domain, G-beta repeat | 180 / 216 | 83.3% | 95.2% of 189 | ≥80% support |
| GO | GO:0043161 Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | 191 / 216 | 88.4% | 99.5% of 192 | ≥80% support |
| GO | GO:0061630 Molecular Function | ubiquitin protein ligase activity | 191 / 216 | 88.4% | 99.5% of 192 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 183 / 216 | 84.7% | 95.3% of 192 | ≥80% support |
| Pfam | PF13923 | zf-C3HC4_2 — Zinc finger, C3HC4 type (RING finger) | 147 / 216 | 68.1% | 77.8% of 189 | ≥50% support |
| KEGG | K10143 | RFWD2, COP1 — Ubiquitin system | 147 / 216 | 68.1% | 98.7% of 149 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinoscyphia liui | gene15301.t1 | XP_031562460.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1-like [Actinia tenebrosa] | Q9R1A8 E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN | JBrowse |
| Actinoscyphia liui | gene15502.t1 | XP_031562460.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1-like [Actinia tenebrosa] | Q8NHY2 E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN= | JBrowse |
